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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence
[CTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATGGGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAATTGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACNATGGGTACCTCCAGAACCACTGNTCGTTACGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC]
[+] EMBL BX624562 [CTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATGGGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAATTGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACNATGGGTACCTCCAGAACCACTGNTCGTTACGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC]
consensusID : consensus_6753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGCTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTACGATCAT]
[+] EMBL BM646117 [CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGCTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTACGATCAT]
consensusID : consensus_6753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 669 fasta sequence
[CCCCG-ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT-AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCACGTGTGGGCCG]
[+] EMBL BM656788 [ CCGCACGATCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCAC ]
[+] EMBL BM626844 [ CCG ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCCCGTTAATCGCTGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAAAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCGGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTC AAGGATGTGT ]
[+] EMBL BM653668 [ccggc ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCCCGTTAATCGCTGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAAAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCGGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTTCAAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGG ]
[+] EMBL BX604427 [ TTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCACGTGTGGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6753#0 -----------------------------------------------------------C 1
consensus_6753#1 CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGC 60
consensus_6753#2 --------CCCCGACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAG--------C 44
*
consensus_6753#0 TTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAA-------CAAACACA 54
consensus_6753#1 TTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAA-------CAAACACA 113
consensus_6753#2 TTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTT 104
** *** *** **** *** * *** * ** ****** * * *
consensus_6753#0 CCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTT 114
consensus_6753#1 CCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTT 173
consensus_6753#2 CCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTT 164
** ************** *** ** ** ***** * **** **** ** *****
consensus_6753#0 AATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCT 174
consensus_6753#1 AATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCT 233
consensus_6753#2 GGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCC 224
** * **** ** ** * ********** ** ** *** **** ** * **
consensus_6753#0 GGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTG 234
consensus_6753#1 GGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTG 293
consensus_6753#2 GGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTG 284
***** ************* ***************** ************ *********
consensus_6753#0 CTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAG 294
consensus_6753#1 CTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAG 353
consensus_6753#2 CTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAG 344
****** **************************** ************************
consensus_6753#0 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGA-ATGAA 353
consensus_6753#1 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGA-ATGAA 412
consensus_6753#2 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACA 404
******************************************* ** ***** * *
consensus_6753#0 TAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTAC 413
consensus_6753#1 TAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTAC 472
consensus_6753#2 CTGAACAGTGGTGT-AGCACCCACTACTACCACTGCAGCAAGCACTACGCCTAT---TGC 460
*** * * * * * * ******* * * * * * ***** * * * *
consensus_6753#0 ACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAG 473
consensus_6753#1 ACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAG 532
consensus_6753#2 GACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAG 520
* ** ** *** ** * ** ** *** *** * ******* ******** *******
consensus_6753#0 ACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATG 533
consensus_6753#1 ACGGACGCTTCC------------------------------------------------ 544
consensus_6753#2 ACGGACGCCTACT----------------------------------------------- 533
******** * *
consensus_6753#0 GGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAAT 593
consensus_6753#1 ------------------------------------------------------------
consensus_6753#2 ------------------------------------------------------------
consensus_6753#0 TGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAG 653
consensus_6753#1 ------------------------------------------AGATGTACCTACGAGAAG 562
consensus_6753#2 -------------------------------------------ACCGTGCGTACAAGAAG 550
** * *** *****
consensus_6753#0 -ATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTA 712
consensus_6753#1 -ATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTA 621
consensus_6753#2 CACCACAATCCGTTTGGACCACTTT---AAGGATGTGTTGCCGGCACGTTGTGGTGAACA 607
* ** * *** * * ** * * * * * * * * * * *
consensus_6753#0 -CATCTGCAACAAGACGAATGCGTACCACNATGGG-TACCTCCAGAACCACTGNTCGTTA 770
consensus_6753#1 -CATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTA 680
consensus_6753#2 GCGGCCTTCATGGAACGTCTG-GTCAGACATTGAG-GACGATGATAACATCCACGTGTG- 664
* * * *** ** ** ** ** * ** * *** * **
consensus_6753#0 CGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC 824
consensus_6753#1 CGATCAT----------------------------------------------- 687
consensus_6753#2 -GGCCG------------------------------------------------ 669
* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||