These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 866 fasta sequence [CCGCCCACGCGTCCGCGCCACG---CC-T--GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA-CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA-GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCTGAAGGCAACGTTCACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGACTTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTCTACCTATCTGCTGGCATTTGTGGTTTCCGA] [+] EMBL BM578376 [CCGCCCACGCGTCCGC CCACGCGTCCGT GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTACCCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACA ] [+] EMBL BM642375 [ CCACGCGTCCGCG GACG CG TGGGCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACAGGTTC ] [+] EMBL BM604559 [ CCGCGCTAAG CC T GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCCAGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCT ] [+] EMBL BM651841 [ cc GCCGGTCGATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTCGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCATACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTCCCTGGTGCCAGTGATCTCAGTGGTGGTGTTGCGAGTGATGAGATTGGCGTAGCTCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTTACGAGCC ] [+] EMBL CNS08ZRO [ GAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCCGACCGACCGCCATACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTCCCTGGTGCCAGTGATCTCAGTGGTGGTGTTGCGAGTGATGAGATCGGCGTAG TCCGGCGCAGGCCGTTGATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGTACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTAGTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAGGTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTACAGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCTCAACGATCCTGCAGCCTGGCACTTA CCTGCTGGAGGTTGCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTATGTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACA GTTCGAATCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACG AACCGGGTCTGAAGGCAACGTTCACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGACTTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTCTACCTATCTGCTGGCATTTGTGGTTTCCGA] consensusID : consensus_6762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence [CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC] [+] EMBL BM617623 [CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCAATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6762#0 CCGCCCACGCGT----CCGCGCCACGCCTGCCGGTCGATAGGTAGAGTGGTACCCCCGCA 56 consensus_6762#1 CCGCCCACGCGTGCGCCCACGTCGTCCGTGCCGGTTTATAGGTAGAGTGGTACCCCCGCA 60 ************ ** ** * * ******* *********************** consensus_6762#0 ATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGTCTGTGCTGCCTGTTGGCATCGGCC 116 consensus_6762#1 ATAATGGTGCGTTTGTTGTTACTAGTTTCGTTAGGGCTGTGCTGCCTGTTGGCATC---- 116 *********************************** ******************** consensus_6762#0 GACCGACCGCCGTACAAGAGTAGTGGAATTTATGAGGAAGAACCACAGCTTCCTGGTGCC 176 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 AGTGATCTCAGTGGTGGTGATGCGAGTGATGAGATCGGCGTAGCTCCGGCGCAGGCCGTT 236 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 GATGAACGCTACCGTCTGCCAACAACGTCCATCCCGATTCACTACGATCTCCATCTGCGT 296 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 ACCGAAATCCATCGCAATGAGCGTACGTTCACTGGTACCGTCGGCATTCAGCTGCAGGTA 356 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 GTGCAGGCGACGGATAAGCTAGTGATGCATAACCGCGGTTTAGTGATGTCGTCGGCCAAG 416 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 GTGTCCTCCCTGCCGAATGGTGTGACCGGTGCACCGACACTGATCGGCGATGTACAGTAC 476 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 AGCACGGATACGACCTTCGAGCATATCACGTTCACGAGCCCAACGATCCTGCAGCCTGGC 536 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 ACTTACCTGCTGGAGGTTTCGTTCCAGGGTCGACTTGCTACCAACGATGACGGTTTCTAT 596 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 GTCTCCTCCTACGTGGCAGACAATGGCGAGCGAAGATATCTGGCAACGACACAGTTCGAA 656 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 TCAACCAGCGCCCGCATGGCATTCCCCTGTTACGACGAAACCGGGTCTGAAGGCAACGTT 716 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 CACCGTTTCCATCACGCATAGCCGCAGCTACAATTTTTTCTCGAACATGCCTCAAAAGAC 776 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 TTTTACGGACATTGAGACCGATATGCGCACCACATTCTTCGAAAAGACCCCAGCCATGTC 836 consensus_6762#1 ------------------------------------------------------------ consensus_6762#0 TACCTATCTGCTGGCATTTGTGGTTTCCGA 866 consensus_6762#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||