|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence
[CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGTAACACACGAAGTAAATGGAGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGATTTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGCTGTAG-ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAA]
[+] EMBL BM651364 [CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGTAACACACGAAGTAAATGGAGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGATTTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAG ]
[+] EMBL BM605317 [ ccgcaaaATGGAGATGTGCATTGCTTCCTACTCGACACAGACACACAGACACACGCAC T TACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATGCCGAAAGCGGCGACAAGTGGTGTAGCCCAACGGGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAACCGCGTGGTGGAAGTGGTAGAATTTTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAATTGTGGTTTTAGTTTATAGTCGATGCAAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGGAGGAGTTTAGAGTGGAGTAAAGGGGACGAATATGCCGTAG ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAATGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTGAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGA ]
[+] EMBL BX618083 [ ATGTCACTACTAATTGTGGTTTTAGTTTTTAGTCGATGCGAATGCCCTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTTAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAATAGTGGAGTAAAGGGGACGAGTATGCTGTAG ACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAA]
[-] EMBL BX626175 [ TAAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGCTGTAGNACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGCATCGAGGACCTCTTCTTAAACGCCTATATGANACCTATACAGATTTTAAACTAATCGAACCATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGTGAGCAAGCATTCACTAGAATCTATGTACTATGAGCCNTTGTTAAGGGTTTGCATTATCATTATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGTTGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTGCGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCAAAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAA ]
consensusID : consensus_6764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGAAGCAATTTATTCAAACAATATAGAAGAAGAAAGAAACACAACCAAAAATACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATCGTACACTCTTCTATAGCGGATATGTGAGATATGTGGAGAAACAAAAAAGTAGATAACCGATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAAAGCAGAAGAACATTGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTATAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAAATGATAGTGAAATCCGCATTATTGGATGTGATTTGATTGGTTTGGAATGGATCGAAGAGGAAAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTATATAAACGTTATAACAAGAGAGAAACAAACACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGAATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCT]
[+] EMBL BM578482 [CCGAAGCAATTTATTCAAACAATATAGAAGAAGAAAGAAACACAACCAAAAATACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATCGTACACTCTTCTATAGCGGATATGTGAGATATGTGGAGAAACAAAAAAGTAGATAACCGATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAAAGCAGAAGAACATTGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTATAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAAATGATAGTGAAATCCGCATTATTGGATGTGATTTGATTGGTTTGGAATGGATCGAAGAGGAAAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTATATAAACGTTATAACAAGAGAGAAACAAACACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGAATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAATAGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCT]
consensusID : consensus_6764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNTGGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCCCTTGTTA]
[+] EMBL BX468103 [GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAAAACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTACCACATCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTGCATTGCTTCCTACTCGACACAGACACACACACACACACACATACACATACTCTTTCCACTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGGCGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCGCCAGTAGTGAGCAGGATTAGTGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNTGGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCGGATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCCCTTGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6764#0 CCGCCCACGCGTCCGTGAAAACAGAACAGAATAGTAGAAATGTGACACAACACAGCAAGT 60
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 AACACACGAAGTAAATGGAGTAAACG-AATAGTAGAAATCACACAAACACAAACATACAA 119
consensus_6764#2 -------------GGCAGAATCGGCACGATGTNAGAAATCACACAAACACAAACATACAA 47
consensus_6764#1 -----CCGAAGCAATTTATTCAAACAATATAGAAGAAG--AAAGAAACACAACCA-AAAA 52
* ** **** * * ******** ** * **
consensus_6764#0 AACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTA 179
consensus_6764#2 AACAGACTCATCACACGGGGCAAGTATCATGCACGATCGGTGTTAGGCACCGGTATTCTA 107
consensus_6764#1 TACACACTCATTAAATGCAAAATAGAATACACAAGATAGAGAAAAAAAAACAGCGCAATC 112
*** ****** * * * * * * ** *** * * * * * *
consensus_6764#0 CCACA-TCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTG 238
consensus_6764#2 CCACA-TCCTCTAAGCCTGAGATCTTACGAAGCAAAATGGGGTATTGAGATGGAAATGTG 166
consensus_6764#1 GTACACTCTTCTATAGCGGATAT---GTGAGATATGTGGAGAAACAAAAAAGTAGATAAC 169
*** ** **** * ** ** ** * * * * * * * * **
consensus_6764#0 CATTGCTTCCTACTCGACACAGACACACACAC-ACACACAC-ATACACATACTCTTTCCA 296
consensus_6764#2 CATTGCTTCCTACTCGACACAGACACACACAC-ACACACAC-ATACACATACTCTTTCCA 224
consensus_6764#1 CG--ATTTCAAACAAGAAAAAGGAATGCAAGGGATGGGTACTGCAGAGAGAGGAAGCTAA 227
* *** ** ** * ** * ** * ** * * * * *
consensus_6764#0 CTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGG 356
consensus_6764#2 CTCTGTATAGTCTGTAAACATTCCAGCGTACTGTCTAAAGAGCCGACATACCGAAAGCGG 284
consensus_6764#1 AGCAGAAGAACAT-TGGAAGATCTAGTAGATCATATCAGATACACAGCAAGGAAAAGCTA 286
* * * * * * * ** ** * * * * * * * *****
consensus_6764#0 CGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCG 416
consensus_6764#2 CGAAAAGTGGTGTAGCCCAACGAGGGAAAGGAATTGAGTGCCAGTGAGTGTGAGTGTGCG 344
consensus_6764#1 TAGATATAGGCACTGTCTCTTCTAGAAGTAGAGCAAAGAATGCGTCAA-ATGATAGTG-- 343
* * ** * * * * ** ** ** * *** ***
consensus_6764#0 CCAGTAGTGAGCAGGATTAG-TGAGAGCCAACAA-CCGCGTGGTGGAAGTGGTAG-ATTT 473
consensus_6764#2 CCAGTAGTGAGCAGGATTAG-TGAGAGCCAACAAGCCGCGTGGTGGAAGTGGTANGATNT 403
consensus_6764#1 ----AAATCCGCATTATTGGATGTGATTTGATTG---GTTTGGAATGGATCGAAG-AGGA 395
* * *** *** * ** ** * * *** * * * *
consensus_6764#0 TTTACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCG 533
consensus_6764#2 GGNACTTTCGAATCACAATTATTCCATGGCGTGATTTTACTTTGTACGTGAAAGCAATCG 463
consensus_6764#1 AAGTCGTTCAAAGCGAATGTAAACGAAAATGACAATCTA-TATAAACGTTATAACAAGAG 454
* *** ** * * ** * * * * * ** * * **** * * *** *
consensus_6764#0 GATGTCAATGTCACTACTAA-TTGTGGTTTTA-----GTTTTTAGTCG-ATGCGAATGCC 586
consensus_6764#2 GATGTCAATGTCACTACTAACTTGTGGTNTTGAGNCTGNNCANAGTCGGATGCGAATGCC 523
consensus_6764#1 AGAAACAAA--CACTATTAAGACGAAGTGAGCAATGTGGTAGAGATGAAAACAGAACAGA 512
*** ***** *** * ** * * * ***
consensus_6764#0 CTTGTTAGTTTATACCGCACTAAGGCGCCGTATGCATTGAAGAACAACAGTACATGACTT 646
consensus_6764#2 CTTGTTA----------------------------------------------------- 530
consensus_6764#1 ATAGTAGAAATGTGACTCAACACAGCAAGTAACACACGAAGTAAATGGCGTAAACGAAT- 571
* **
consensus_6764#0 AAGCGTAACTTTGTTTGAGGAGGGAAGGAGTTAAGAGTGGAGTAAAGGGGACGAGTATGC 706
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 -AGTAGAAATCACACAAACACAAACATACAAAACAGACACATCACACGGGGCAAGTATCA 630
consensus_6764#0 TGTAGACGTATCCTAAGGAATCGCCAAATCTTGGATTCAACGCTATTATTAAAGGGTCGC 766
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 TGCACGATCGGTGTTAGGCACCGGTATTCT------------------------------ 660
consensus_6764#0 ATCGAGGACCTCTTCTTAAACGCCTATATGAAACCTATACAGATTTTAAACTAATCGAAC 826
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 CATTATTTTTAAGGCTAACACCGTGGTAAAACCGTGAACCACATACACTGTGAGCAATGT 886
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 GAGCAAGCATTCACTAGAATCTATGTACTATGAGCTATTGTTAAGGGTTTGCATTATCAT 946
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 TATTAGTCCTATTTCATATCGAGCGGTTACGTTTTTAGATTATGTTTATCATTTTGTTGT 1006
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 TGTAAGACGATATTATTCCAGTCCAAAAACCGTTGAAATTGAAAATTATCTCTGTGTCTG 1066
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 CGTGCGAAAGGGGTGTTAAAGGAAGGGTACGAAAAGAGCTCTATTGTAATGAAAATACCA 1126
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 AAACATAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGA 1186
consensus_6764#2 ------------------------------------------------------------
consensus_6764#1 ------------------------------------------------------------
consensus_6764#0 GAGAAAAA 1194
consensus_6764#2 --------
consensus_6764#1 --------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||