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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1569 fasta sequence
[CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAG-AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAA-GGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG-TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA-CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGA-CAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAACAGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGGCAGAGAATCTCCTGCAT]
[+] EMBL BM637758 [CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCG ]
[+] EMBL CNS09OSJ [ CGGCATTTAAAAGCTAATTCAAACAGTAACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCATGATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCACATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTTTGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAGATCTCAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAAAAATGGCACTGGTGTGCACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCATCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAG AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTT ]
[+] EMBL CNS08ZV5 [ TGATTGGAATGCGAACGGACCTCGCTGCCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGAAACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGATACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATTGCATAGAATCGTTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAGCAAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAA GGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGA CAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGA ]
[-] EMBL CNS09OSK [ CATGAGCTTCCAGGGAGTGAGAGAG AAAATTGTCCCAAAGTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGCAGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAAAAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCGCGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGAGCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCACGTTGGCCGAAGGGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCG TAATTGTGCGCTGTTTGAAAAGCATCGTGAAGA CTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGAGCAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGG ]
[-] EMBL CNS08ZV6 [ TGCACGAGTTTTACGGAGTGGCAATGCTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAGCTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAATTGGTGCCGCTAATTGTGCGCTGTTTGAAAAGCATCGTGAAGAGCTTTTTTGGTAAGATTAGCCTGGATGGTTATTCGGCGGAGCAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGGAATGAGACATAAGAGCACGAATATCTTCAACATCTCCAACAACTGCACCAGGAAGTGAAAACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACCGAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAACAGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGGCAGAGAATCTCCTGCAT]
consensusID : consensus_6767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[GCCCCCGAGGTTCAGTATGGAATCAACAGATAACGACGTGCTTTGTGCTGATAGGATACTGTTCACTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGGTTTTTTAAGGAAGGTACCACATGAGCTTCCAGAGTGAGAGAGAAATGTCCAAAGTGTGACGTCTGCACTTCCCGTGGAGTTGGAAGCTGGCAAGAGAGTTGTTAAAGCTGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGGCTCATCGCTGGGAGCACGATAAAA]
[+] EMBL AL693117 [GCCCCCGAGGTTCAGTATGGAATCAACAGATAACGACGTGCTTTGTGCTGATAGGATACTGTTCACTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGGTTTTTTAAGGAAGGTACCACATGAGCTTCCAGAGTGAGAGAGAAATGTCCAAAGTGTGACGTCTGCACTTCCCGTGGAGTTGGAAGCTGGCAAGAGAGTTGTTAAAGCTGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGGCTCATCGCTGGGAGCACGATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6767#0 CCGGGAAGCCTCGGGCATGGTTCCAGCATTTACCGGCATTTAAAAGCTAATTCAAACAGT 60
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 AACAACGAATTCTTACTATCGCCTGAGAAATAGAAAACGGGGACTATAATCACCTTTCAT 120
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 GATGTTTTAGTTTTAATCCTTACTTTAAGTGCTACACGGCTGTCTAGGACAGCACATTCA 180
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CATGCACACACACAGCACATTCACATTCACAGCACATGTTTGCCCACATGGCGCCAATTT 240
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TGATTCTGGAAGCATTCTACGGCGGTTCCCACAAACAGCTGGTAGATGTGTTACTGAAAG 300
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 ATCTGAAGGAGGAAGAGTACGATCTGCTTACCATTCCGGCGAAGAAATGGCACTGGTGTG 360
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CACGGATGAGTGCGTTACACTTTGCCGGCCGCATCTCTACTGCCCACCGGTACCAAACCA 420
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TCTTCTGCAGCTCGGTACTGAACCTAGCTGAGCTGATTGGAATGCGAACGGATCTCGCTG 480
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCTGCCGGAAGATTGTTTACTTTCACGAAAATCAACTGTGCTACCCGGTCAGGGATGCGA 540
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 AACAGCGTGACGTCCAGTATGGAATCAACCAGATAACGACGTGCCTTTGTGCTGATAGGA 600
consensus_6767#1 --GCCCCCGAGGTTCAGTATGGAATCAAC-AGATAACGACGTGC-TTTGTGCTGATAGGA 56
* ** ** *************** ************** ***************
consensus_6767#0 TACTGTTCAACTCACGGTACAACATGAACTCCTTTCTCGATT--GCATAGAA----TCG- 653
consensus_6767#1 TACTGTTCA-CTCACGGTACAACATGAACTCCTTTCTCGAATTGGCATAGGAAAATCCGG 115
********* ****************************** * ****** * **
consensus_6767#0 -TTTTTAAGGAAGGTACCCAACATGAGCTTCCAGGGAGTGAGAGAGAAAATTGTCCCAAA 712
consensus_6767#1 TTTTTTAAGGAAGGTACC--ACATGAGCTTCCAG--AGTGAGAGAGAAA--TGTCC-AAA 168
***************** ************** ************* ***** ***
consensus_6767#0 GTGTGACGTTCTGTACTTCCCGGTGGAGTTTGGGAAGCTGACAAAGAGAGGCGTTAAAGC 772
consensus_6767#1 GTGTGACGT-CTGCACTTCCCG-TGGAGTT--GGAAGCTGGCAA-GAGAGTTGTTAAAGC 223
********* *** ******** ******* ******** *** ***** ********
consensus_6767#0 AGAGAAAGAAGAAAGCCCTCCTCTGCACATCATTTGGCCTCATCGCTGGGAGCACGATAA 832
consensus_6767#1 TGAGAAAGAAGATAGCCCTCCTCTCCACATCATTGG--CTCATCGCTGGGAGCACGATAA 281
*********** *********** ********* * **********************
consensus_6767#0 AAATCCGGAACAGCTTGTCGAAGCGTTGCTGGCACTTCAAGCAAAGGGGGTCAACTTTCG 892
consensus_6767#1 AA---------------------------------------------------------- 283
**
consensus_6767#0 CGTCTCAATACTGGGCGAACGATTCGAAACCATTCCCAGTTGCTTTGAGCAGCTGGAGGA 952
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 GCGATTGCCGGGGAAGGTGGCACAGTTTGGACCACTGCCGAGGGAGGAGTATCTGCGCAC 1012
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 GTTGGCCGAAGGGATGTGGTACTGTCCACCGCACTGCACGAGTTTTACGGAGTGGCAATG 1072
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CTTGAAGCGGTTTACAGTGGATGTGTCCCATTGGTTCCGAACCGGTTAGTTTATCCGGAG 1132
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CTATATCCAAAGGATAAACTGTTCAATACAACGGCACAGTTGGTAAAGCAGCTGTACAAT 1192
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TGGTGCCGTAATTGTGCGCTGTTTGAAAAGCATCGTGAAGACTTTTTTGGTAAGATTAGC 1252
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CTGGATGGTTATTCGGCGGACAGCTTGTGCCGCAATTCATCGCCGTTCTAAGGAATACGG 1312
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 AATGAGACATAAGAGCACGAATATCTTCAACTTCTCCAACAACTGCACCAGGAAGTGAAA 1372
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 ACGGCTCCGTACTACAGTCCCCATCATTGCAAGCCCACCAAGCGGAGGACGCATTCCACC 1432
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 GAGTAACATCGGGATTTTCAGCAGAAAAGCTATTTGGCCATCTACTCACCGGGTGAAAAC 1492
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 AGGATTACCGCCTTCATGCATCCCAGCTCGCTTAGGTCGGGCGAAATCTGGCGAAAGCGG 1552
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CAGAGAATCTCCTGCAT 1569
consensus_6767#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||