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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence
[CAGAATCCCCGACGGTTATTGGAGGCTTTCGTTTCTACCGAACGTTCTCGCCATGGGCCACAACGTCCACCGCAGCAGGATACTTACCAGCAAACAGACAGGACACAGTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTGAGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATCCCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTANGNTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTGCACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGACTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTCGGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTGGCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAACCTTTCCGAAAGCCAAGCGTNCCTTGGACTAACGGCAAAAGGCACCTNTTGAATGGGGGTCTANGCACCAAACCCGACTCTNCTAACCCAACTCCCCGATTGAACATTGACTNGCTGGCTGANTCCACCCGTTACGNTGGCGCTCCAATTATAACNCTNAACAGGGGCCGGACACACTAACGCCAACTATNCCTTGAGACNGAATTGGAAGCTCAGGCGACCCACCNCGCCGTNGCCTAACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNTTGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC]
[+] EMBL AL693095 [CAGAATCCCCGACGGTTATTGGAGGCTTTCGTTTCTACCGAACGTTCTCGCCATGGGCCACAACGTCCACCGCAGCAGGATACTTACCAGCAAACAGACAGGACACAGTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTGAGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATCCCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTANGNTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTGCACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGACTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTCGGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTGGCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAACCTTTCCGAAAGCCAAGCGTNCCTTGGACTAACGGCAAAAGGCACCTNTTGAATGGGGGTCTANGCACCAAACCCGACTCTNCTAACCCAACTCCCCGATTGAACATTGACTNGCTGGCTGANTCCACCCGTTACGNTGGCGCTCCAATTATAACNCTNAACAGGGGCCGGACACACTAACGCCAACTATNCCTTGAGACNGAATTGGAAGCTCAGGCGACCCACCNCGCCGTNGCCTAACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNTTGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC]
consensusID : consensus_6769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 867 fasta sequence
[AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAATAAAAACAACCATATGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCATG]
[+] EMBL CNS09H8G [AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGTTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGAACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAATAAAAACAACCATATGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCATG]
[+] EMBL BM585527 [ cCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAG ]
[+] EMBL BM647130 [ CCGAAGAAAACATACAC TTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTAGTGGATTTACTTGCAACTAGCATTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGTTACACAGCGAGTTCAGCAATGGGCCACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACGCTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAGAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTTATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCA ]
[+] EMBL BM617135 [ ccgGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCGGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGCAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAAT ]
consensusID : consensus_6769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CAGAATCGGCACGAGGTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCAAAGAAAACATACACTTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTACGTGGATTTACTTGCAACTAGCTTTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGGTTAACACAGCGAGTTCAGCAATGGGCCACCCTTTCGCTAGGACATGGCACATTTTCGATTTGCACTTTGGGCAAAAACCCCTTTCGAAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTTACCATCCGATGAATGATTGTGGGTGATCACGGTTAGTGGTCAGTTAAACTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTGAAGTTGGCAAAAAGCGTGCCTTACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTGCACGAANAACAGGATCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAACTGAAGGGTAATCTAGNAGCGGAGACACGACGATGCAACCGGGGTACACCCTGTTCCAAGGACGCCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT]
[+] EMBL BX468732 [CAGAATCGGCACGAGGTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCAAAGAAAACATACACTTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTACGTGGATTTACTTGCAACTAGCTTTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGGTTAACACAGCGAGTTCAGCAATGGGCCACCCTTTCGCTAGGACATGGCACATTTTCGATTTGCACTTTGGGCAAAAACCCCTTTCGAAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTTACCATCCGATGAATGATTGTGGGTGATCACGGTTAGTGGTCAGTTAAACTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTGAAGTTGGCAAAAAGCGTGCCTTACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTGCACGAANAACAGGATCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAACTGAAGGGTAATCTAGNAGCGGAGACACGACGATGCAACCGGGGTACACCCTGTTCCAAGGACGCCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6769#1 AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCG- 59
consensus_6769#2 --------------CAGAATCGGCA---CGAGGTGTCAGATGGTGTTGTGATTGCTGCG- 42
consensus_6769#0 --------------CAGAATCCCCGA--CG-GTTATTGGAGGCTTTCGTTTCTACCGAAC 43
** ** * * ** * * * ** * * * ** * * *
consensus_6769#1 GCACATGCCAAAGAAAACA-TACACATTTTTGCACTAATTTTCTCCAGTTTTCGAA-AGG 117
consensus_6769#2 GCACATGC-AAAGAAAACA-TACAC-TTTTTGCACTAATTTTCTCCAGTTTTCGAA-AGG 98
consensus_6769#0 GTTCTCGCCATGGGCCACAACGTCCACCGCAGCAG-GATACTTACCAGCAAACAGACAGG 102
* * ** * * *** * *** ** * **** * * ***
consensus_6769#1 ATTTGTGTGTGTTTTA-G-TGGATTTACTTGCAGCTAGCAT--TTATCCATCGTTCCGAA 173
consensus_6769#2 ATTTGTGCGTGTTTTACG-TGGATTTACTTGCAACTAGCTT--TTATCCGTCGTTCCGAG 155
consensus_6769#0 ACACA---GTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTG 159
* ** ***** * * ** * * ** ** * * * *** *
consensus_6769#1 GTTTGCGGGGATGTCAGTT--ACA----CAGCGAGTTCAGCAATGGG---CTACC--TTC 222
consensus_6769#2 GTTTGCGAGGATGTCGGGTTAACA----CAGCGAGTTCAGCAATGGG---CCACCCTTTC 208
consensus_6769#0 AGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATC 219
** * *** * * **** *** * * **
consensus_6769#1 GCTAGGAC-ATGGCACATTTTCGA----TT-GCACTT--GGCAAA----A--CCCCTTCG 268
consensus_6769#2 GCTAGGAC-ATGGCACATTTTCGA----TTTGCACTTTGGGCAAA----AACCCCTTTCG 259
consensus_6769#0 CCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTG 279
* * * *** ***** * * ** **** * ** *
consensus_6769#1 AAG--CAGCGTCC--TTGAT--AAGAAAGCACTTGATGGG--TTTGCACAAACCGATTT- 319
consensus_6769#2 AAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTT 319
consensus_6769#0 TCAGATGGTGTANG-NTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTG 338
* ** **** **** * ** * *** ***
consensus_6769#1 -ACCAT--------CCGATGAATGATTGT---GG-TGATCACG--TAGTGGTCA------ 358
consensus_6769#2 -ACCAT--------CCGATGAATGATTGT---GGGTGATCACGGTTAGTGGTCAGTTAAA 367
consensus_6769#0 CACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGA 398
** * ** * * * * ** ** * *
consensus_6769#1 TTAATACGGGCG-AAATAGCACTTCC-TGGCGAT---GAGTGG--AAAAAGCGTGCC-T- 409
consensus_6769#2 CTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTG-AAGTTGGCAAAAAGCGTGCC-TT 425
consensus_6769#0 CTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTC 458
** * ** ***** ** * ** * * * * * * *
consensus_6769#1 ACTTTC-ACCA-CAC-GGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGC-AATTG 465
consensus_6769#2 ACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTG 485
consensus_6769#0 GGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTG 518
* ** * * * ** * ** *** * * * * *****
consensus_6769#1 -CACGAAAAA---GA-TCCCA-CGATGA-TCATGAAGAAA-GCGGTTT-ACCGAG-CAA- 514
consensus_6769#2 -CACGAANAACAGGA-TCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAAC 543
consensus_6769#0 GCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAA---CCTTTCCGAAAGCCAAG 575
*** * * ** * * * * * * ** *** *** ** ***
consensus_6769#1 TGAAGGGTAATCT-GCAGCGGA-GACAC-ACGATGCAAC--GGCTACACC-TGTTC-AAG 567
consensus_6769#2 TGAAGGGTAATCTAGNAGCGGA-GACACGACGATGCAACCGGGGTACACCCTGTTCCAAG 602
consensus_6769#0 CGTNCCTTGGACTAACGGCAAAAGGCAC--CTNTTGAATGGGGGTCTAN---GCACCAAA 630
* * ** ** * * *** * * ** ** * * * * **
consensus_6769#1 GACG-CCGAGGTA-CCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCAC 625
consensus_6769#2 GACG-CCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT-------------- 647
consensus_6769#0 CCCGACTCTNCTAACCCAACTCCCCGATTGAACAT-TGACTNGCTGGCTGANTCCACC-C 688
** * ** ** ** * * * *
consensus_6769#1 GCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGG 685
consensus_6769#2 ------------------------------------------------------------
consensus_6769#0 GTTACGNT----GGCGCTCCAATTATAACNCTNAACAGGGGCCGGACA----CACTAACG 740
consensus_6769#1 TAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCG 745
consensus_6769#2 ------------------------------------------------------------
consensus_6769#0 CCAACTATNCCTTG--AGACNGAATTGGAAGCTCAGGCGAC-CCACCNCGCCGTNGCCTA 797
consensus_6769#1 CATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAA--TAAAAACAACCATA 803
consensus_6769#2 ------------------------------------------------------------
consensus_6769#0 ACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNT 857
consensus_6769#1 TGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCC 863
consensus_6769#2 ------------------------------------------------------------
consensus_6769#0 TGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC---- 913
consensus_6769#1 CATG 867
consensus_6769#2 ----
consensus_6769#0 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||