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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1137 fasta sequence
[CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCGACAAAATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCCAACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCCAACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTACCAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAAGCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAATTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACGGAAAAGTGTTCCGGC]
[+] EMBL BX615581 [CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCGACAAAATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATC ]
[+] EMBL BM650411 [ ccgGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCCGAGCTGGAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCCAACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCCAACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTACCAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAAGCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAATTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACGGAAAAGTGTTCCGGC]
consensusID : consensus_6770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence
[CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAA]
[+] EMBL BM641482 [CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAG ]
[+] EMBL BM627112 [ ccgCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT GACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAA]
[+] EMBL BM642001 [ ccGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGGGCGAGAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAAACCGCAAGCGACAGC AAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATC ]
consensusID : consensus_6770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAG]
[+] EMBL BM646305 [CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6770#1 CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAA-----CGGTTTTACCGAACGACATCCGG 55
consensus_6770#2 CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGG 60
consensus_6770#0 ------------------------------------------------------------
consensus_6770#1 TAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAA 115
consensus_6770#2 TAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAA 120
consensus_6770#0 ------------------------------------------------------------
consensus_6770#1 GTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCAC 175
consensus_6770#2 GTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCAC 180
consensus_6770#0 ------------------------------------------------------------
consensus_6770#1 GATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCC-AGAAACATGCTGGCCGCG 234
consensus_6770#2 GATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCC-AGAAACATGCTGGCCGCG 239
consensus_6770#0 ----------------CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCG 44
* ** ** * ** *** *** ** * ***
consensus_6770#1 CCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 294
consensus_6770#2 CCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 299
consensus_6770#0 ACAAA-ATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 103
*** * ***************************************************
consensus_6770#1 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 354
consensus_6770#2 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 359
consensus_6770#0 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 163
************************************************************
consensus_6770#1 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 414
consensus_6770#2 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 419
consensus_6770#0 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 223
************************************************************
consensus_6770#1 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTA 474
consensus_6770#2 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTA 479
consensus_6770#0 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTA 283
***************************************************** ******
consensus_6770#1 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 534
consensus_6770#2 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 539
consensus_6770#0 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 343
************************************************************
consensus_6770#1 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGC 594
consensus_6770#2 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT-GACAAACGTGGC 598
consensus_6770#0 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT-GACAAACGTGGC 402
*********************************************** ************
consensus_6770#1 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 654
consensus_6770#2 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 658
consensus_6770#0 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 462
************************************************************
consensus_6770#1 GCCAAGCGCAA------------------------------------------------- 665
consensus_6770#2 GCCAAG------------------------------------------------------ 664
consensus_6770#0 GCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAG 522
******
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 AGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCG 582
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 AGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCAC 642
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 AGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAA 702
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 TCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCC 762
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 CAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCC 822
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 AACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCC 882
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 AACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTAC 942
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 CAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAA 1002
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 GCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAA 1062
consensus_6770#1 ------------------------------------------------------------
consensus_6770#2 ------------------------------------------------------------
consensus_6770#0 TTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACG 1122
consensus_6770#1 ---------------
consensus_6770#2 ---------------
consensus_6770#0 GAAAAGTGTTCCGGC 1137
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||