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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1336 fasta sequence
[ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGCTGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA-AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG----AGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG-G-GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT-AACACATCGTGTTTCGGGTGAAATGCGCATG---TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAG-AAAAAAATACCTCAATCTGGTCTAATCTTCGACAATAGCAACCAGCAGCTGCTAGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGGAACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTGCGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTGTATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAGATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAATTCGTTTAAACAAAGGTTTAA]
[+] EMBL CNS08IVZ [ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGCTGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACTTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAGAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG AGAGAGAGCTCTGTTAAGCCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTA TATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAG AAAAAAATACCTCAATCTG ]
[+] EMBL BM628795 [ ccgCAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCT AAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAAT AGAGAGAG AGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCATTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G G ]
[+] EMBL BM581595 [ ccgCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCT AAACGGGCGCATATACATACATAAATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGATAGGGAATGTACAGTGGCAGCAGCACTAGTGAAGGCATAGTAACTGTACAGCTTTGTAT AAAA AAGTAGTATCGACGTTGGATTAATGCACTGCAGGAATGTTGTAAGATGTTATAAT AGAGAG AGAGTGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTAAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTATGGTTAGCCTCATTAGGAGAGAAAGAGTACCGTTAAGAAGCTGCCG TTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATGTTGACTATCTTTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCTAATTATTAACTATc ]
[+] EMBL BM589977 [ ccgAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAA AAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTATGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GCAAGAGTACTGTTAAGAAGCTGCCG TTTTTGGTTTTAAACACATCGTGTTTCGGGTGAAA ACGCATGTTTTTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGA AG AAAAAATACCTCAATCTGGTCT ]
[-] EMBL CNS08IW0 [ CACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAGAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAG AGAGAGAGCTCTGTTAAGCCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGGAGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTGTGCGCATACGTGTGTAAGGTTAGCCTCATTAGG G GAAAGAGTACTGTTAAGAAGCTGCCGTTTTTTGGTTTT AACACATCGTGTTTCGGGTGAAATGCGCATG TTTTTTTTTATTTTGACTATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTAGAGAGAGAAAAAAAATACCTCAATCTGTTCTAATCTTCGACAATAGCAACCAGCAGCTGCTAGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGGAACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTGCGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTGTATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAGATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAATTCGTTTAAACAAAGGTTTAA]
consensusID : consensus_6782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CCGCCCACGCGTCCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTC]
[+] EMBL BM610737 [CCGCCCACGCGTCCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGCAGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGAAGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAGGTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCATTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGTGGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACGCCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTGTGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAAAGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACTGCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAGTCAGTCAGTCAGTCAGTCAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6782#0 ACCCGGGCAAGTACGCCCAGCACCTGGAACGATGGCTCGCCTGCTACCCACCGCAGCAGC 60
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TGTACATCATCGACGGGGAGCAGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGC 120
consensus_6782#1 ------CCGCCCACGCGT--CCGCTCAAGACGAACCCGGTCACGGTGATGAACGATCTGC 52
* * *** * * **************************************
consensus_6782#0 AGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGA 180
consensus_6782#1 AGCGCTTCCTGAAGCTGCCACCGTTCGACTACAGCCGACATCTGCGCTTCGACAATAAGA 112
************************************************************
consensus_6782#0 AGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTTGGCAAGTCGAAAG 240
consensus_6782#1 AGGGTTTCTACTGCCAGGTGGTGTCGGACAATCGGAACAAGTGTCTCGGCAAGTCGAAAG 172
********************************************** *************
consensus_6782#0 GTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCA 300
consensus_6782#1 GTCGCCAGTATCCGCCGATGGACGATCGGAGTGCAAAAATGCTTCAAAAGTACTACCGCA 232
************************************************************
consensus_6782#0 TTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGT 360
consensus_6782#1 TTCACAACCAAGCGCTGGTGAAGCTGCTGAAGAAGCTTGGCTCGCGACCAATTCCCCAGT 292
************************************************************
consensus_6782#0 GGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACG 420
consensus_6782#1 GGCTGAAGGAGGACCTATCGGTGACTTCTTAACGAACGTAGCGACACCGGCGTGACGACG 352
************************************************************
consensus_6782#0 CCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTG 480
consensus_6782#1 CCTAAAACGGGCGCATATACATACATATATTCCACTACTTTTTAGCGTAAAGCAGCTGTG 412
************************************************************
consensus_6782#0 TGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAA 540
consensus_6782#1 TGCGGGTACTAAGCGGGTAAAGTGAGGTAGTGAATGTACAGTGGCAGCAGCACTAGTGAA 472
************************************************************
consensus_6782#0 AGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACT 600
consensus_6782#1 AGCATAGTAACTGTACAGCTTTGTATAAAAAAAGTAGTATCGACGTTGGATCAATGCACT 532
************************************************************
consensus_6782#0 GCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGA----GAGAGCTCTGTTAAG 656
consensus_6782#1 GCAGGAATGTTGTAAGATGTTATAATAGAGAGAGAGAGAGATAGAGAGAGCTCTGTTAAG 592
***************************************** ***************
consensus_6782#0 TCAGTCAGTCAGTCAGTCAGTCAGAATGTTTCCCGCTGTCCATGAACCGCTGTGATGTGG 716
consensus_6782#1 TCAGTCAGTCAGTCAGTCAGTC-------------------------------------- 614
**********************
consensus_6782#0 AGAAAGATGTATCATATTTTACGTAGTATTACGTCGGTTCCTTCGTTTTTAGTCGTTGTG 776
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TGCGCATACGTGTGTAAGGTTAGCCTCATTAGGGGAAAGAGTACTGTTAAGAAGCTGCCG 836
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TTTTTTGGTTTTAACACATCGTGTTTCGGGTGAAATGCGCATGTTTTTTTTTATTTTGAC 896
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TATCATTTCTTCGTCGGAGCAATGACGTATAAAACGGAGCAAATTATTAACTATATTTTA 956
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 GAGAGAGAAAAAAATACCTCAATCTGGTCTAATCTTCGACAATAGCAACCAGCAGCTGCT 1016
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 AGCGTGTGTATTTAAACTGTTTGAGTTTAGTCACTGTGTCACTACAAAACCCTTATTTGG 1076
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 AACTGAACAGCTCTAGCACCAAACGAAGCTCTAAAACAAGTGCAGAACCAGTACGCAGTG 1136
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 CGCGGTGATGCGGCCATCCTAGCCATATAAGTATGTAAGTGATATTATATTTTCCTACTG 1196
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TATCGTTTGTTTTAACTCTTTGGTTTAACACTTCACTCGTTAGTACAACAAGGGCAGAAG 1256
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 ATTGTGTTACGCGACAGTTGAAAGTTGACTAATTATTTGTATGTATCGAAGGCCACTAAT 1316
consensus_6782#1 ------------------------------------------------------------
consensus_6782#0 TCGTTTAAACAAAGGTTTAA 1336
consensus_6782#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||