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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 963 fasta sequence
[ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAATGTTGATCATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACAAGGATCTGCAGTACGATGGGTTCTACAACTTCATGAAGAACCTACAGACGGAGGTGCTC-GAGTTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTT-CCCGA-GCGGTGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAGTTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAAACGAAAAACAACTTACTGGC]
[+] EMBL BX619809 [ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAATGTTGATCATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACAAGGATCTGCAGTACGATGGGTTCTACAACTTCATGAAGAACCTACAGACGGAGGTGCTC GAGTTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAGTTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGCAT ]
[+] EMBL BM645494 [ cCGAAAGCACAAGGTCGATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTC GAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTT CCCGA GCGGTGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGG ]
[+] EMBL BX621366 [ CTTCNGAAAGAAGGGTGACAAGGATCTGCANTACGATGGGTTCTACAACTTCATGAAGAACCTACNNACGGAGGTGCTCTGAGTTGGAATTTTGTGAATTTTCCAANGGCCACTAACGCATCTCCGANGTGGACTTTGCNAAAATCCTACTTCTCTACACCTATCTTGATACNGATGANTACGACAACTACCTGGACCGT ]
[+] EMBL BM653772 [ cgtccgGACCGAGGTGCTC GAGCTGGAATTTTGTTTATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGTTTTTGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTTCCCCCACCCCCCGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAGTTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAAACGAAAAACAACTTACTGGC]
consensusID : consensus_6784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAATGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTTCGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGTTAATAGTTGTGCTGTGCCCCCCCTCCCCCTGTGTGGCAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACAACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTCGTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAAAAAACAACAAATAGAACTCGTCTTTGAATTGCTAATGGACATGGTCTGATTTAATTATCCATTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAAGCGTGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACNCTCCAAATACATT]
[+] EMBL BX623205 [TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAATGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTTCGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGTTAATAGTTGTGCTGTGCCCCCCCTCCCCCTGTGTGGCAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACAACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTCGTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAAAAAACAACAAATAGAACTCGTCTTTGAATTGCTAATGGACATGGTCTGATTTAATTATCCATTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAAGCGTGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACNCTCCAAATACATT]
consensusID : consensus_6784#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGAGGCTCGCCACCATATTAAACACCCTTTTCCTCGTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAATAAAAAAGCAACAAATAGAACGCGCTTTTGAATTGCTAATGGACTGATTTAATTATCCTTTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG]
[+] EMBL BM581334 [CCGAGGCTCGCCACCATATTAAACACCCTTTTCCTCGTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAATAAAAAAGCAACAAATAGAACGCGCTTTTGAATTGCTAATGGACTGATTTAATTATCCTTTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6784#1 TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAA 60
consensus_6784#2 ------------------------------------------------------------
consensus_6784#0 ----ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAA 56
consensus_6784#1 TGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTT 120
consensus_6784#2 ------------------------------------------------------------
consensus_6784#0 TGTTGATCATGGAAAAAATTT-TCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGT 115
consensus_6784#1 CGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGT-TAATAGTTGTGCTGTGCCCCC 179
consensus_6784#2 ------------------------------------------------------------
consensus_6784#0 AA--GGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGC 173
consensus_6784#1 CCTCCCCCTGTGTGG-CAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACA 238
consensus_6784#2 ------------------------------------------------------------
consensus_6784#0 AGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACA 233
consensus_6784#1 ACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTC 298
consensus_6784#2 --------------------CCGAGGCTCGCC-ACCATATTAAACA---CCCTTTTCCTC 36
consensus_6784#0 AGGAT--CTGCAGTACGATGGGTTCTACAACT--TCATGAAGAACCT-ACAGACGGAGGT 288
* * *** *
consensus_6784#1 GTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCA 358
consensus_6784#2 GTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCA 96
consensus_6784#0 GCTCGAGTTGGAATTTTGTGA-ATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACT 347
* * ** * ** * * ** * * * * * ** * * * *
consensus_6784#1 TTGCTGTCGTCCGGTCCTCCT---TGTGCTGTAACCTGTGCGTGCACG-----TACTCAT 410
consensus_6784#2 TTGCTGTCGTCCGGTCCTCCT---TGTGCTGTAACCTGTGCGTGCACG-----TACTCAT 148
consensus_6784#0 TTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGG 407
**** *** ** * * * * * * *** ***
consensus_6784#1 ATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGAC 470
consensus_6784#2 ATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGAC 208
consensus_6784#0 ACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAAT-TCCGACAG 466
* * * * * * * ** ** *** * ** * * * * *
consensus_6784#1 TAAAACAAA----AAAACAACAAATAGAACTCGTCT-TTGAATTGCTAATGGACATGGTC 525
consensus_6784#2 TAAAACAAATAAAAAAGCAACAAATAGAACGCGCTT-TTGAATTGCTAATGGAC------ 261
consensus_6784#0 TTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTC 526
* * * * *** * ** *** *** *** **
consensus_6784#1 --TGATTTAATTATCC-----ATTTATTTCCTTTCATCGCTTACAATTCACAC--GCTCC 576
consensus_6784#2 --TGATTTAATTATCC-----TTTTATTTCCTTTCATCGCTTACAATTCACAC--GCTCC 312
consensus_6784#0 GCCGATCAACCGATTTCGAAAGATGAGTTTTCCCGAGCGGTGAAAATTTGCACCGGTTCT 586
*** * ** * * ** * ** * * **** *** * **
consensus_6784#1 GTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAA-GCG 635
consensus_6784#2 GTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAA-GCG 371
consensus_6784#0 GAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGG 646
* * ** * ** * ** ** ***** * * ** * * *
consensus_6784#1 TGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGA 695
consensus_6784#2 TGGCATTGAAAGTAAGGAAGGCGAA-GAGCCAGGAGAACATGATGACTACGTGGA--CGA 428
consensus_6784#0 CTGCTCTCGTA-CAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAA 705
** * * ***** * ** ** * * ***** * *
consensus_6784#1 CGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGA-CNCT-CCAAATACATT----- 748
consensus_6784#2 CGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAA-CGCT-CCAGATACATTTCTTC 486
consensus_6784#0 --ATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATG 763
* *** * ** *** * * ** * * * * * * **
consensus_6784#1 ------------------------------------------------------------
consensus_6784#2 GGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTA 546
consensus_6784#0 AAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTC 823
consensus_6784#1 ------------------------------------------------------------
consensus_6784#2 CAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCC 606
consensus_6784#0 GTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAG 883
consensus_6784#1 ------------------------------------------------------------
consensus_6784#2 GAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG----------------- 649
consensus_6784#0 TTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAA 943
consensus_6784#1 --------------------
consensus_6784#2 --------------------
consensus_6784#0 ACGAAAAACAACTTACTGGC 963
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||