These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1133 fasta sequence [TTTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGAAACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTGACAAA-CCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA] [+] EMBL CNS09NFS [TTTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGAAACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTGACAAA CCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGTTTCTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGG ] [-] EMBL CNS09NFR [ ATTTGACAAACCCCGCCCGTGGGTATATTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTCTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTT ] [-] EMBL BX604217 [ ATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTATTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA] consensusID : consensus_6786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCACAAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCACTGTAGCTGAGGTTTGAAATTGCCCGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCA-ATACAGACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG] [-] EMBL BX609126 [CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCACAAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGTGGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTCCTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCACTGTAGCTGAGGTTTGAAATTGCCCGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCA ATACAGACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAA ] [-] EMBL AL692834 [ CAGCTCAAACTCGGTAAACTTCTCTGGAAGCAGCAGCAACGCAGCATGCACCGCCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGA CTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCTCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACCACGTATATGAGATCGATCATGTTGCGCTTCGAGCGAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAAAGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGAGCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCATTCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG] consensusID : consensus_6786#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCCCGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCGCTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGAATTCTGCCTCG] [-] EMBL BX468230 [CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCCCGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCGCTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATGATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCTTCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATTTGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGCCCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGTGTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGAATTCTGCCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6786#1 CTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACTGTAGCGTACGGATTTCAC 60 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 -----------------------------------------------------------T 1 consensus_6786#1 AAAACCGGCCGTGGGTATGTTTTTAATCGATTGCCAAACGCTACTCGACCAAACAATCGA 120 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 TTGATAACACATGATCTGAAATCTTTATTGAGTTCATTTAGACTAGTGTTAAATCCCTGA 61 consensus_6786#1 ACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACGCGACACGCCTATTAGTAT 180 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 AACTGAACCCGTCGCGTACTAGCCCTACTAGCTAAATGTTTTCAACGCCTTGGCCCAACT 121 consensus_6786#1 GTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTCGACGATCAAACGTATGGG 240 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 GTAGCGTACGGATTTGACAAACCCGGCCGTGGGTATATTTTTAATCGATTGCCAAACGCT 181 consensus_6786#1 CCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTCCGCAAGGTCCTGTGTGCA 300 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 ACTCGACCAAACAATCGAACGGAGACACGAAGCCACAATGGACTGGTAGTTTGTGGCACG 241 consensus_6786#1 GATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCCACGGAACTCCTCGAACGT 360 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 CGACACGCCTATTAGTATGTCTTCCGTGTCCTGTCTGTAGCGCCCGCTTGTCTGCCGCTC 301 consensus_6786#1 GGCTGAATACAGGTTGCGAAAGTTTTCCAGCTGAGGCCGCACAATATTATTGACCTTGTC 420 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 GACGATCAAACGTATGGGCCACTTGGGCAGCCCGTTCAGGTGAGCCAGAATCGTGGGTTC 361 consensus_6786#1 CTTGTTCTCGCCAAAAATCATCCGAAAGTCGCCAC-TGTAGCTGAGGTTTGAAA-TTGCC 478 consensus_6786#2 --------------------------CGTCGCCACCTGTAGCTGAGGTTTGAAACTTGCC 34 consensus_6786#0 CGCAAGGTCCTGTGTGCAGATTTGATTGTCGCTCCCAGCGATCGGTAGCTCCAGGCAGCC 421 ***** * * * * * *** consensus_6786#1 -CGATACAGCTCAAACTCGGTAAACTTCTCCGGAAGCAGCAGCAACGCAGCATGCA-CCG 536 consensus_6786#2 -CGATACAGCTCAAACTCGGTAAACTTCTCTAGAAGCAGCAGCAACGCAGCATGCNACCG 93 consensus_6786#0 ACGGAACTCCTCGAACGTGGCTGAATACA--GGTTGCGAAAGTTCTCCAGC-TGAGGCCG 478 ** ** *** *** ** * * * * ** ** **** ** *** consensus_6786#1 C-CGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTCGAGCTGGATGCGTTCCGTATG 595 consensus_6786#2 CTCGAGCGAAGGTTTTGCTCCATTGCGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATG 153 consensus_6786#0 CACAA--TATTATTGACCTTGTCCTTGTTCTGAATTTTTGAGCTGGATGCGTTCCGTATG 536 * * * * ** ** ************ ********************* consensus_6786#1 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCA-ATACAGACAGCGCCAATCCGTCAGGTCT 654 consensus_6786#2 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCT 213 consensus_6786#0 ATCTCGACCGGCTTGTGCAGCCGTCCGGCCAGATACAAACAGCGCCAATCCGTCAGGTCT 596 ******************************* ***** ********************** consensus_6786#1 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 714 consensus_6786#2 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 273 consensus_6786#0 TCGAGCAGATCCTTCGTAGACACGACGCCGTACTTGATGATCACGTCTTCCTCGGGAATT 656 ************************************************************ consensus_6786#1 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 774 consensus_6786#2 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 333 consensus_6786#0 TGCACGAGCGTGTTGAAGTACACCCGAGCACCGAACGATTCCTGGTACTTGGCGATCAGC 716 ************************************************************ consensus_6786#1 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGC-TCAAAGTTTTGGTCCAGATTTGCCGT 833 consensus_6786#2 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGCATCAAAGTTTTGGTCCAGATTTGCCGT 393 consensus_6786#0 CCTCCGCCGAGCAGGCGCATGCTGGAATAGTGC-TCAAAGTTTTGGTCCAGATTTGCCGT 775 ********************************* ************************** consensus_6786#1 GTGCCAGCGGTGTGCATTGTCTAC-CACGTATATGAGATCGATCATGTTGCGCTTCGAGC 892 consensus_6786#2 GTGCCAGCGGTGTGCATTGTCTACGCACGTATATGAGATCGATCATACNCTCGTGCGGGA 453 consensus_6786#0 GTGCCAGCGGTGTGCATTGTCTAC-CACGTATATGAGATCGATCATGTTGCGCTTCGAGC 834 ************************ ********************* * ** * consensus_6786#1 GAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAA 952 consensus_6786#2 ATTCTGCCTCG------------------------------------------------- 464 consensus_6786#0 GAACGGATTCGTAGCCCAGCTGCTGCTTTACGCCGGATCCGTACGCAAAGCAGAAGGAAA 894 * * *** consensus_6786#1 AGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGA 1012 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 AGCCTTGCGGAAACTTGGACAGCAACCGGAAGAACATCGGTGCGGTGTTGCCTCGGGAGA 954 consensus_6786#1 GCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCAT 1072 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 GCATTGTTTGGGTGTGCTGGTAGATCGGTGAACGTTTGCCCGCACTGTACACTTTTGCAT 1014 consensus_6786#1 TCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTGTATAAACTCGGGGATTCTG 1132 consensus_6786#2 ------------------------------------------------------------ consensus_6786#0 TCCCCTTCACTAACAGAACATTTTAGCGCTCTGCGTTCGTTGTATCGACACTTTTTGTTA 1074 consensus_6786#1 ----------------------------------------------------------- consensus_6786#2 ----------------------------------------------------------- consensus_6786#0 TTACTTAACACATTCCGCGCGTAATCCAGCACTTAGTTATCGATTGCCGACAAGCCGTA 1133 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||