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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1378 fasta sequence
[CCGAAGAAACTTTGTTTTGTTGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACTCTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTTTATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGAATTTCCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAA--ACACACATACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACACCGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCTAGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC]
[+] EMBL BM604132 [CCGAAGAAACTTTGTTTTGTTGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACTCTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTTTATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGAATTTCCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAA ACACACATACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGAT ]
[+] EMBL BM610045 [ ccgCTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCCTCACGTGGCGTCACTCAACCACTGGCCAGCGGAGTTCCCAATGCCGTTCCACGCGATATATGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGATACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAAACACACACACACACACACATACACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATACGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAA ]
[+] EMBL BX608046 [ CAAAAGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGC ]
[+] EMBL BX626704 [ AATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAATTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACCAGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTATTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGCTCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGCAGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAGGAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTTTGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACACCGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCTAGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC]
consensusID : consensus_6795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGCTACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACACACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTTTGCCATGTTTGAGGCTTAAAACTTAACTGAAAGAGCAATTGAAGAGATTTCTGGTGCTCGCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGCATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACACACGAAATGGAACAACTAT]
[+] EMBL BX468994 [GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAATTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGTGTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGCTACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACACACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTTTGCCATGTTTGAGGCTTAAAACTTAACTGAAAGAGCAATTGAAGAGATTTCTGGTGCTCGCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGCATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACACACGAAATGGAACAACTAT]
consensusID : consensus_6795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 112 fasta sequence
[ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGAAATACCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG]
[+] EMBL BX617887 [ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGAAATACCAACTCGGCTTATGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6795#0 ------------------------------------------------------------
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 GCAGAATCGCCACGAGNGTAATTATGCGTGGAGACAGTGCACACTGGCGCACGACAGAGA 60
consensus_6795#0 ------------------------------------------------------------
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 AGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTAGGG 120
consensus_6795#0 ------------------------------------------------------------
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 CAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGTAAA 180
consensus_6795#0 ------------------------------------------------------------
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 TTAATTGTACATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTGTGT 240
consensus_6795#0 ----------------------------------------CCGAAGAAACTTTGTTTTGT 20
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 GTGTGTTGCATATTTATACATCAATCATACCTGGATACTTCGTCTCTACTGTAATTCGGC 300
consensus_6795#0 TGCAATATAGGATATAAAGGAGCAGTTAAACTCATAACTACATGTATCATCTATGACACT 80
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 TACAGTGGATAGCGTTGTTTCACCTTTACAAGAAAAAGCTCAAATTTAATCACCAGCACA 360
consensus_6795#0 CTTAGCTAGGTAAGAATTTAGGATAATGGAAAGTTTCCCACCCGTTTCTCTTGCTCCGTT 140
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 CACGGTTGCGTTATTTCTTGGTTCAATATTTATCCCATTGCTGCAGAGATGTTCTATAGT 420
consensus_6795#0 TATCTCGCTCTCACTCTCTTTCGTGTCCCATTCCACGCGGA--ATTTCCAACTCGGCTTA 198
consensus_6795#2 -ATCACGCTCTCACTCTCTTGCGTGTCCCATTCCACGCGGA--AATACCAACTCGGCTTA 57
consensus_6795#1 CGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATCAATCGTAAACTATTGTT 480
* * ** ** * ** ** * * * * * * * ** *
consensus_6795#0 TGACGAGTGGAAAACAAGTAGGTTAGCGTAGGATTTCAAATGTAGGATTTTCCTGACCCC 258
consensus_6795#2 TGACGAGTGGAAAACAAGTAGGTTAGCGTAGGAATTCAAATGTAGGAATGGCCTG----- 112
consensus_6795#1 TGCCATGTTTGAGGCTTAAAACTTAAC-TGAAAGAGCAATTGAAGAGATTTCTGGTGCTC 539
** * ** * * * *** * * * *** ** ** * * *
consensus_6795#0 TCACGTGGCGTCACTCAACCACAGGCCAGCGGAATTCCCAATGCCGTTCCATGCGATATA 318
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 GCTCTTGTACATCTTGTAGCTNGGGGTGGATNGTCAAAGGGAAATTGGAATTGTGCAGGC 599
consensus_6795#0 TGTTGGTCGAGATGACGATTCGAACTTACTAACTGACGAAAGATTTGATTAGAAATGTGA 378
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ATAAGCGCAGATATACCGATAGTNCGGTCTGCTCCCAATGTAATGGCAAACGGGGCACAC 659
consensus_6795#0 TACTTTAGCTACGGGATATTTACACCGAAAGAGGGAAGAAACACACATACACACACATAC 438
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ACGAAATGGAACAACTAT------------------------------------------ 677
consensus_6795#0 ACACACTTACTATTATTGTACACGGCGATAGGTTTATAGGCAAATTTATAGTTATATATA 498
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 CGAGCAAAACGGGACAGATGAAGATTAATGCGTGGAGACAGTGCAACTGGCGCACGACAG 558
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 AGAAGAGAGTTCCTTTTGCAGCTCCCAAGACGACGACATTGATCATATATGGGTAAGCTA 618
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 GGGCAAAAGAGTACCACTGATTTCAAAAGCTATAAAAAGAGCTTGCATAAAAATAACGGT 678
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 AAATTAATTGTCCATTTTTTTGTACATCTTTTGGTTTTGTACATTAGCTCGATTCGTGTG 738
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 TGTGTGTGTGTGTTGCATATTTATACAACAATTATACCTGATATTTCGTTTCTACTGTAA 798
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 TTCAGCTACAGTGGATAGGGTTGTTCCACCTTTACAAAAAAAAGCTCAAATTTAATCACC 858
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 AGCACACACGATTGCGTAATTTCTTGATTCAATATTTATCCCATTGCTGCAGAGTGTTCT 918
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 ATAGTCGAAAGGGTATCCTTCCTCTGGGTCACCAACAACGCACATATAAATCGTAAACTA 978
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 TTTTTCCATTTTGAGGCTTAAAACTTAATGAAAAGCAATTGAAGAGATTTCTGTGCTCGC 1038
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 TCTTGTACATCTTGTAGCTTGGGTGGATTGTTAGGGAAAGAAATTGTGCAGCATAAGCGC 1098
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 AGATTAGTTTGCCTGCTCCAATCCAAGGCGACGGCGCACACCGAATTGACCACTATTAAG 1158
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 GAGCGAGGGTTCGATATTACGATATTACATTAATAACAATAATAATATTCGCAAATGTTT 1218
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 TGGGTGCTATTACTTTGGATAAATGTGAGAAGCGGTTCTCATCGTCGGAGANGCAAACAC 1278
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 CGTCCGGTACCACGGTGAATGATTCGCATTTTACACGTGGACGCGGACGGCTACCTTTCT 1338
consensus_6795#2 ------------------------------------------------------------
consensus_6795#1 ------------------------------------------------------------
consensus_6795#0 AGAGTCTATTACAATGGTACAATTCCTAAGGGGTAGCGAC 1378
consensus_6795#2 ----------------------------------------
consensus_6795#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||