These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1067 fasta sequence [CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTCCCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCACCACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGACGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTATGATATCTATTTGTGCACGTGCGCGCCCGCCCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTAC] [+] EMBL BM646995 [CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTCCCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCACCACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGACGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGA GAACAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAAACA CAGCAAAAACCGACCAGCCCATCCACTCACCCACCCTTCTTCA ] [+] EMBL BX628764 [ CTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCTGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCT ] [+] EMBL BX609951 [ TGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTATGATATCTATTTGTGCACGTGCGCGCCCGCCCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTAC] consensusID : consensus_6798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCAACTCCAACCCATCTACTANTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTANTAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTGCGAACCAATGACGATGCTGCTGCTACATACACATACACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCAAATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGACTAAACGAAAGGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAATTGGCTCGCACTTTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACAA] [+] EMBL AL697030 [AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCAACTCCAACCCATCTACTANTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTANTAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTGCGAACCAATGACGATGCTGCTGCTACATACACATACACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCAAATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGACTAAACGAAAGGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAATTGGCTCGCACTTTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACAA] consensusID : consensus_6798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTGCAGTGCGTACGCGAATCTGACGCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACCCCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAGGGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTTACCACAACAACAACAACATGTCGATTGGCGAACGGTTGCGCTACGATCAGCATTCGATCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTAATGCGCTACCACCTGCCCAACCCTGTCAACATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCTATTTCCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA] [+] EMBL BX626484 [TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTGCAGTGCGTACGCGAATCTGACGCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACCCCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAGGGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTTACCACAACAACAACAACATGTCGATTGGCGAACGGTTGCGCTACGATCAGCATTCGATCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTAATGCGCTACCACCTGCCCAACCCTGTCAACATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCTATTTCCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA] consensusID : consensus_6798#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CCCCGAGGTTAACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTGATATCTATTTGTGCACGTGCGCGCCCGCGCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT] [+] EMBL AL692643 [CCCCGAGGTTAACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTGATATCTATTTGTGCACGTGCGCGCCCGCGCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6798#0 CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTT 60 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTC 120 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCAC 180 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGA 240 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA 300 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 GAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTAC 360 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 GTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCC 420 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 ACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTC 480 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 ACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGC 540 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 GAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTG 600 consensus_6798#3 ------------------------------------------------------------ consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CAATCACCAGCAAAAACCGACCAGCCCACCCACTCAC--CCACCCTTCTTCACCTTTACC 658 consensus_6798#3 ------------------------CCCCGAGGTTAAC--CCACCCTTCTTCACCTTTACC 34 consensus_6798#1 ---------AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAA 51 consensus_6798#2 -------TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTG-CAGTGCGTACGCGAATCTGAC 52 * * * consensus_6798#0 GTGGTCAGAGGGGATGGAA---AGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTT 715 consensus_6798#3 GTGGTCAGAGGGGATGGAA---AGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTT 91 consensus_6798#1 AAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCAC-CCAACT 110 consensus_6798#2 GCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACC 112 * * * ** * consensus_6798#0 ACGCTAAACAAACTA--AGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCA 773 consensus_6798#3 ACGCTAAACAAACTA--AGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCA 149 consensus_6798#1 CCAACCCATCTACTA--NTACTACATACACATACACACTCGCGCGCGCA-TACACTGTCA 167 consensus_6798#2 CCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAG 172 * * ** * * * * * * * consensus_6798#0 CCGTG---TGGAATGGGGCTGACGAGAA------AGAAACGGGAGGTGCGGAAGCGTTGT 824 consensus_6798#3 CCGTG---TGGAATGGGGCTGACGAGAA------AGAAACGGGAGGTGCGGAAGCGTTGT 200 consensus_6798#1 CCGAGAAATAGTAAATGATAAATAATCACTACT-ANTAGAGAGAGAGACGAGAGAGAGAG 226 consensus_6798#2 GGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTT 232 * * * * * * * * * * consensus_6798#0 GAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCG-TACCCTTCGCT-CACA 882 consensus_6798#3 GAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCG-TACCCTTCGCT-CACA 258 consensus_6798#1 AGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTG-CG-AACCAATGACGATGCT 284 consensus_6798#2 ACCACAACAACAACAACATGTCGATTG---GCGAACGGTTGCGCTACGATCAGCATTCGA 289 * * * * * * * ** ** * consensus_6798#0 GCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAA 942 consensus_6798#3 GCTGCTAAAAGCTTCTAATCCGCC-TCCTTTAACAATAAAAAACACCGAACGTCTAAAAA 317 consensus_6798#1 GCTGCTACATACACATA-CACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCA 343 consensus_6798#2 TCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTA-ATGCGCTACCACCTGCCCAACCC 348 **** * * * * *** * consensus_6798#0 AAAATTGGATTTG-CCATGGTTGGGCAGGGGAAAGTAG-ATAG-GAGCTATGATATCTAT 999 consensus_6798#3 AAAATTGGATTTG-CCATGGTTGGGCAGGGGAAAGTAG-ATAG-GAGC--TGATATCTAT 372 consensus_6798#1 AATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGA 403 consensus_6798#2 TG---TCAACATG-----CACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTC 400 * * * * * ** * ** * consensus_6798#0 TTGTGCACGT----GCGCGCCCGCCCGCG-TGTGTGTGTGTGTGTGGGGATGGTATTTGA 1054 consensus_6798#3 TTGTGCACGT----GCGCGCCCGCGCGCG-TGTGTGTGTGTGTGTGGGGATGGTATTTGA 427 consensus_6798#1 CTAAACGAAA----GGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAA 459 consensus_6798#2 TTCAAAGGGACACAACAGGCTCAGAGGTGGTATAT-TCCACGTAACTTCATCTTCTATTT 459 * ** * * * consensus_6798#0 TGGTGGTGGGTAC----------------------------------------------- 1067 consensus_6798#3 TGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT----- 482 consensus_6798#1 T--TGGCTCGCACT-TTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACA 516 consensus_6798#2 CCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA----------- 508 * * consensus_6798#0 - consensus_6798#3 - consensus_6798#1 A 517 consensus_6798#2 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||