cluster # 68

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Anopheles gambiae
cluster # 68 cluster # 68 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_68#0 length = 626 sequences # 1

consensus_68#1 length = 527 sequences # 1

consensusID : consensus_68#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCACGCGTCCGCGGACGCGTGGGCTAGTTCTAGATCGTTATCGGCCCCTTATCGGTTGACGTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCTTAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAATGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGGCTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCCACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTAGTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTGACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTGTATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCAAGCCGTGTGTGTTTGTCAGTGTCTGATTGTGTGTAGCTACAATAAAAGGAATAAGAAACAGGTGAAGTGAAGACAGGCGTAAGGAAAAAGG]

[+] EMBL BM629584             [CCACGCGTCCGCGGACGCGTGGGCTAGTTCTAGATCGTTATCGGCCCCTTATCGGTTGACGTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCTTAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAATGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGGCTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCCACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTAGTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTGACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTGTATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCAAGCCGTGTGTGTTTGTCAGTGTCTGATTGTGTGTAGCTACAATAAAAGGAATAAGAAACAGGTGAAGTGAAGACAGGCGTAAGGAAAAAGG]




>consensus_68#0
CCACGCGTCCGCGGACGCGTGGGCTAGTTCTAGATCGTTATCGGCCCCTTATCGGTTGAC
GTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCT
TAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAA
TGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGG
CTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCC
ACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTA
GTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTG
ACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTG
TATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCAAGCCG
TGTGTGTTTGTCAGTGTCTGATTGTGTGTAGCTACAATAAAAGGAATAAGAAACAGGTGA
AGTGAAGACAGGCGTAAGGAAAAAGG

consensusID : consensus_68#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCGAACAGGCCCACTGGGTAGGAGTGTCGTTATCGGTCGTTTATCGGTTGACGTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCTTAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAATGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGGCTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCCACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTAGTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTGACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTGTATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCA]

[+] EMBL BM632065             [CCGAACAGGCCCACTGGGTAGGAGTGTCGTTATCGGTCGTTTATCGGTTGACGTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCTTAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAATGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGGCTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCCACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTAGTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTGACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTGTATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCA]




>consensus_68#1
CCGAACAGGCCCACTGGGTAGGAGTGTCGTTATCGGTCGTTTATCGGTTGACGTACGAGC
CGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCTTAAGCTAA
ACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAATGTGAGTG
TCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGGCTAGATTA
TTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCCACCAAACG
GCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTAGTGCTGTA
TGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTGACGTTCAA
AATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTGTATAGATA
ACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_68#0      CCACGCGTCCGCGGACGCGTGGGCTAGTTCTAGATCGTTATCGGCCCCTTATCGGTTGAC 60
consensus_68#1      ------CCGAACAGGCCCACTGGGTAGGAGTG--TCGTTATCGGTCGTTTATCGGTTGAC 52
                               * * * *   ** ***   *   ********** *  ************

consensus_68#0      GTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCT 120
consensus_68#1      GTACGAGCCGTGATCTTTTGCGAAGAGTGTCATTCCAGGCTTTATTCTTGCTAAAACGCT 112
                    ************************************************************

consensus_68#0      TAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAA 180
consensus_68#1      TAAGCTAAACACATGCTGTGACAGATTCGTTCGGTGACGGCTCGAAAAGTGAACCGGAAA 172
                    ************************************************************

consensus_68#0      TGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGG 240
consensus_68#1      TGTGAGTGTCGTCTTCCAAGCGTGTGAATGTGTTTGTGTGTGTGTGTGAGAGTTTCACGG 232
                    ************************************************************

consensus_68#0      CTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCC 300
consensus_68#1      CTAGATTATTGTGCGTTGGTACTGTGAAGTGGAGCAAAATAGGAAAACGTAAGTGTTGCC 292
                    ************************************************************

consensus_68#0      ACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTA 360
consensus_68#1      ACCAAACGGCACAACGCTGACAGATCCAAGCGCGCGCGAGAGTGTGTGAGTGCATTGTTA 352
                    ************************************************************

consensus_68#0      GTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTG 420
consensus_68#1      GTGCTGTATGTGTGCTTTGTGTGTGTGTAGAGCAGCTGCAAAAAGGGGTGACGTCCTTTG 412
                    ************************************************************

consensus_68#0      ACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTG 480
consensus_68#1      ACGTTCAAAATCGCGGAATGTCAATCTAGTTCGGGCTCAGCGACTGAAACGCTGCTCTTG 472
                    ************************************************************

consensus_68#0      TATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCAAGCCG 540
consensus_68#1      TATAGATAACCCCCCGTGCAGGAAGCAGGGCTAGCCCGATATCATTTTTCTTCCA----- 527
                    *******************************************************     

consensus_68#0      TGTGTGTTTGTCAGTGTCTGATTGTGTGTAGCTACAATAAAAGGAATAAGAAACAGGTGA 600
consensus_68#1      ------------------------------------------------------------
                                                                                

consensus_68#0      AGTGAAGACAGGCGTAAGGAAAAAGG 626
consensus_68#1      --------------------------