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Anopheles gambiae
cluster # 6809 cluster # 6809       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6809#0 length = 1134 sequences # 5  
consensus_6809#1 length = 580 sequences # 1  

consensusID : consensus_6809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1134
fasta sequence
                              [CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG---CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT]

[+] EMBL BM609297             [CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAA   CAGCAGCAGCAGCAG   CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAACATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACTGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGGGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS08GAF             [ tttccatatCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAGCACCAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCGCTA CAGCTCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX621837             [              TACGTTCACTCTACGCCGGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG   CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX628287             [                                                                                                                                                                                 GCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTCCTGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATG                                                                                                                                                                                                                                    ]
[-] EMBL CNS08GAG             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTGCTGGACCGGGATCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT]


>consensus_6809#0 CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGA GTTCCACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCCGGAGTTTTACGGTCCA GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA CAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGG GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTC GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTA CTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTC TACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTC AGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGC TGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGGCCGCACCGGGC GAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTG AACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATG CCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATA ACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCG ACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTT TACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATG AAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAA AGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT



consensusID : consensus_6809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG]

[+] EMBL BM617692             [CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG]


>consensus_6809#1 CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGA GCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCG TGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAG ACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACA GCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGT CGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTT GAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGT TGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATC AGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCT TGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6809#0      CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGA 60
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      GTTCCACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCCGGAGTTTTACGGTCCA 120
consensus_6809#1      ---------------------CCGCGGACGCGTGGGCGGACGC-GTGGGTTTACGGTCCA 38
                                           * ** *  **    ** * *** *  * ***********

consensus_6809#0      GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 180
consensus_6809#1      GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 98
                      ************************************************************

consensus_6809#0      CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 240
consensus_6809#1      CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 158
                      ************************************************************

consensus_6809#0      CAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGG 300
consensus_6809#1      CAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGG 218
                      ************* ****************************************** ***

consensus_6809#0      GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTC 360
consensus_6809#1      GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTC 278
                      ******************************************** ***************

consensus_6809#0      GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAAT-- 418
consensus_6809#1      GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGT 338
                      **********************************************************  

consensus_6809#0      ------------------------------------------------------------
consensus_6809#1      AAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCC 398
                                                                                  

consensus_6809#0      ---------TACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 469
consensus_6809#1      ATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 458
                               ***************************************************

consensus_6809#0      ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 529
consensus_6809#1      ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 518
                      ************************************************************

consensus_6809#0      TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGA 589
consensus_6809#1      TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGA 578
                      ********************************************************* **

consensus_6809#0      AGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGG 649
consensus_6809#1      AG---------------------------------------------------------- 580
                      **                                                          

consensus_6809#0      CCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGA 709
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACG 769
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      CGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGA 829
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      AGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACT 889
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      ACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGC 949
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCAT 1009
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      CACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTA 1069
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      CATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCAT 1129
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      GATGT 1134
consensus_6809#1      -----
                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)