These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence [GCAGATNCCCCGAGGTTTCATACCATCGGGA-CTCCAGCAATCATGGCAATTTTCAATAAAATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCACCGTGCTTACCTTCGGATACACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGTNTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCGTATCTGGATTAAACCATTCAACCAAATACTAAACTTTANATAAACCCCCCGAGCTGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGTGGACTACATATGCACACAACACCCNCCCCCCCCCCACCANCACAAACTCCTAAACGCGCAGGCCGCAAGCTATATCCCCTTANANCTGACCCGCTANAATCCTATACCCCTTGNCCACATGGCCCCGCACGCTCCANACAACCNCTCACTACACNTGGNCAAAACCCTTGCCGATATACCCCACCCTATCAACTCGCCCTTTGCCNCCCACATCCCCCTCTATCGCCACCCTTGCCG] [+] EMBL AL692427 [GCAGATNCCCCGAGGTTTCATACCATCGGGA CTCCAGCAATCATGGCAATTTTCAATAAAATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCACCGTGCTTACCTTCGGATACACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGTNTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCGTATCTGGATTAAACCATTCAACCAAATACTAAACTTTANATAAACCCCCCGAGCTGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGTGGACTACATATGCACACAACACCCNCCCCCCCCCCACCANCACAAACTCCTAAACGCGCAGGCCGCAAGCTATATCCCCTTANANCTGACCCGCTANAATCCTATACCCCTTGNCCACATGGCCCCGCACGCTCCANACAACCNCTCACTACACNTGGNCAAAACCCTTGCCGATATACCCCACCCTATCAACTCGCCCTTTGCCNCCCACATCCCCCTCTATCGCCACCCTTGCCG] [+] EMBL BM632413 [ ccgGGGACCTCCAGCAATCATGGCAATTTTCAATAAAATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCACCGTGCTTACCTTCGGAT CACGGAACAGGAATTCACCCAGCTGCCGA CCATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGT TCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCGTATCTGGATTAAACCATTCAACCAAATACTAAACTTTAAATAAACCCCCCGAG TGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGTGGA TA ATATG ] consensusID : consensus_6816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 522 fasta sequence [CCGGGCAATTTTCAATAAAATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCACCGTGCTTACCTTCGGATCACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGTTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCG-TATCTGGATTAAACCATTCAACCAAATACTA-AACTTTAAATAAACCCCCCG-AGTGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGTGGATAATATGAAAATCGAAGCATATTTTCATTTTAAATTTTAGATAACGTCTTTAAAGGTATTACACCTTCAT] [+] EMBL BM606057 [CCGGGCAATTTTCAATAAAATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCACCGTGCTTACCTTCGGATCACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGTTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCG TATCTGGATTAAACCATTCAACCAAATACTA AACTTTAAATAAACCCCCCG AGTGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGTGGATAATATGAAAATCGAAGCATATTTTCATTTTAAATTTTAGATAACGTCTTTAAAGGTATTACACCTTCAT] [+] EMBL BX613706 [ TACTCTGCCGCCCAGCACCGTGCTTACCTTCGGATCACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTTCCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACATTCCCTCGTTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCG TATCTGGATTAAACCATTCAACCAAATACTA AACTTTAAATAAACCCCCCG AGTGTGGTCCACGTGGTGTACATCTTGCTGCGTGAGGTGT ] [-] EMBL BM603332 [ ATTTCAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTTGCGAACATTCCCTCGTTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCTCCAGTGTACGAGCAGCCCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCG TATCTGGATTAAACCATTCAACCAAATACTA AACTCTAAATAAACCCCCCG AGTGTGGTCCACGTGGTGTACATCATGCTGCGTGAGGTGTGGATAATATGAAAAaaaacgg ] [+] EMBL BX619483 [ ctgctCGTACACTACGGAACCGNGATCTGGATTAAACCATTCAACCAAATACTATCACTTTAAATAAACCCCCCGNAGTGTGGTCCACGTGGTGTACATCTTGCTGCGTGng ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6816#0 GCAGATNCCCCGAGGTTTCATACCATCGGGACTCCAGCAATCATGGCAATTTTCAATAAA 60 consensus_6816#1 -----------------------------------------CCGGGCAATTTTCAATAAA 19 * **************** consensus_6816#0 ATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCAC 120 consensus_6816#1 ATTCAAATCGTGCTCGGATTTCTGTCCCTGCTTCATGCGGCTTACTCTGCCGCCCAGCAC 79 ************************************************************ consensus_6816#0 CGTGCTTACCTTCGGATACACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTT 180 consensus_6816#1 CGTGCTTACCTTCGGAT-CACGGAACAGGAATTCACCCAGCTGCCGATCGATATAATTTT 138 ***************** ****************************************** consensus_6816#0 CCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTT 240 consensus_6816#1 CCAAGCGATTGCGAGCTTAATCTACATCATCTACAACATCCTGCAAGTGGTGGGCGATTT 198 ************************************************************ consensus_6816#0 CAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACAT 300 consensus_6816#1 CAAGGAGATTCGTGCTGCGGTTGATTTGCAGGCGAAATCGTGGGAAACTCTCGCGAACAT 258 ************************************************************ consensus_6816#0 TCCCTCGTNTCTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGC 360 consensus_6816#1 TCCCTCGTT-CTACACGTTCAACCACCGAGGCAAAGCGCTGTCCCCAGTGTACGAGCAGC 317 ******** ************************************************** consensus_6816#0 CCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCGTATCTGGATTAAACCATTC 420 consensus_6816#1 CCGACCCGGAGCAGTACGATCGTGCGTACACGACGGAACCGTATCTGGATTAAACCATTC 377 ************************************************************ consensus_6816#0 AACCAAATACTAAACTTTANATAAACCCCCCGAGCTGTGGTCCACGTGGTGTACATCTTG 480 consensus_6816#1 AACCAAATACTAAACTTTAAATAAACCCCCCGAG-TGTGGTCCACGTGGTGTACATCTTG 436 ******************* ************** ************************* consensus_6816#0 CTGCGTGAGGTGTGGACTACATATGCACACAACACCCNCCCCCCCCCCACCANCACAAAC 540 consensus_6816#1 CTGCGTGAGGTGTGGATAATATGAAAAT-CGAAGCATATTTTC--------ATTTTAAAT 487 **************** * ** * * * * * * *** consensus_6816#0 TCCTAAACGCGCAGGCCGCAAGCTATATCCCCTTANANCTGACCCGCTANAATCCTATAC 600 consensus_6816#1 TTTAGATAACGTCT-TTAAAGGTATTACACCTTCAT------------------------ 522 * * ** * * ** ** * * consensus_6816#0 CCCTTGNCCACATGGCCCCGCACGCTCCANACAACCNCTCACTACACNTGGNCAAAACCC 660 consensus_6816#1 ------------------------------------------------------------ consensus_6816#0 TTGCCGATATACCCCACCCTATCAACTCGCCCTTTGCCNCCCACATCCCCCTCTATCGCC 720 consensus_6816#1 ------------------------------------------------------------ consensus_6816#0 ACCCTTGCCG 730 consensus_6816#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||