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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 766 fasta sequence
[CCGTGCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTCCTATTCACTTTGTTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAAGGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT]
[+] EMBL BM646760 [CCGTGCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTCCTATTCACTTTGTTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGT ]
[+] EMBL BX608891 [ AAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTT AAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAAGGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT]
consensusID : consensus_6818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCCGAGGTTTNNGATAAGCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGACAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCAATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCACCACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCCTTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCCNCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGCCGCCCCCTGNGCCTGCGCTCGCGCC]
[+] EMBL AL692385 [CCCGAGGTTTNNGATAAGCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGACAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCAATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCACCACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCCTTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCCNCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGCCGCCCCCTGNGCCTGCGCTCGCGCC]
consensusID : consensus_6818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGAAGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTG-TGCATGTTCCATTCATTTTGTCATTTGTGTCAAG-ACGACGNACACCTGTGACTTGCGCTATTCACTTTGGTGTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAAC-AAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACNAAC-CTCGGGCGATTCT]
[-] EMBL AL932045 [TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGAAGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTG TGCATGTTCCATTCATTTTGTCATTTGTGTCAAG ACGACGNACACCTGTGACTTGCGCTATTCACTTTGGTGTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAAC AAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACNAAC CTCGGGCGATTC ]
[-] EMBL BX466168 [ tAATTTGTGAC TC AACATGTGCTGCAT TTCCATTCATTTTGTCATGTGTGTCAAGAACGACGAACACCTGT ACTT C CTATTCACTTT GTCTCTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAG ATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAACAAAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATAGTCTGCGTCTGCCGCTTCAACATACACTCGTGCGGATCT]
consensusID : consensus_6818#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[ATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTGGTAGCTATAAATATTACAAAAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCCTTTTGCCCTGCAGCAGCAGAAGATCAATTATTGCTTAGCCTGGTTTTAGCAGTTAAGTTAAGAAAAAAAGCAGGAATTATTAATTGTTAAACAATGTGTCATAAAATGTAAATGCTGCAGCTCCCAGAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA]
[+] EMBL BX609556 [ATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTGGTAGCTATAAATATTACAAAAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCCTTTTGCCCTGCAGCAGCAGAAGATCAATTATTGCTTAGCCTGGTTTTAGCAGTTAAGTTAAGAAAAAAAGCAGGAATTATTAATTGTTAAACAATGTGTCATAAAATGTAAATGCTGCAGCTCCCAGAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6818#0 ------------------------------------------------------------
consensus_6818#2 TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGA 60
consensus_6818#1 ------------------------------------------------------------
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 --------------------------------------------------------CCGT 4
consensus_6818#2 AGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTGTGCATGTTCCAT 120
consensus_6818#1 ------------------------------------------------------------
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 GCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTC---CTATTCACTTTG-- 59
consensus_6818#2 TCATTTTGTCATTTGTGTCAAGA-CGACGNACACCTGTGACTTGCGCTATTCACTTTGGT 179
consensus_6818#1 ------------------------------------------------------------
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 -TTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGA 118
consensus_6818#2 GTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGA 239
consensus_6818#1 ------------------------------------------------------------
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 ATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAAC 178
consensus_6818#2 ATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCA-TTCACGATCAAC 298
consensus_6818#1 --------------------------------------------------CCCGAGGTTT 10
consensus_6818#3 -----------------------------------------------ATAATCGATCAAA 13
***
consensus_6818#0 CGGATAAA-GCTGATCGATTACACACACACTTCACTGTG-AAGGAGCGAAAGAACGGGCG 236
consensus_6818#2 CGGATAAA-GCTGATCGATTACACACACACTTCACTGTG-AAGGAGCGAAAGAACGGGCG 356
consensus_6818#1 NNGATAA--GCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCG 68
consensus_6818#3 CCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTG---GTAGCTATAAATATTACA 70
* * ** * *** * * ** * *** * * * *
consensus_6818#0 ATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGT 296
consensus_6818#2 ATCT---AAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGT 413
consensus_6818#1 ATCTTA-AAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGT 127
consensus_6818#3 A------AAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCC-------T 117
* ** ** ******** * ** * ** *** * * ** *
consensus_6818#0 TTTTGATTGCAAAATCGAGCGATGAAG-ATTGGAAGTGGATAAAAATCAAAATATTATTA 355
consensus_6818#2 TTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTA 473
consensus_6818#1 TTTTGATTGCAAAATCGAGCGATGAAG-ATTGGAAGTGGATAAAAATCAAAATATTATTA 186
consensus_6818#3 TTTGCCCTGCAGCAGCAGAAGATCAATTATTGCT--TAGCCTGGTTTTAGCAGTTAAGTT 175
*** **** * * *** ** **** * * * * * * * *
consensus_6818#0 TTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 415
consensus_6818#2 TAAGGAACAAA-CCCAACCACT--TTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 530
consensus_6818#1 TTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 246
consensus_6818#3 AAGAAAAAAAGCAGGAATTATTAATTGTTAAACAA----TGTGTCATAAAATGTAAATGC 231
** ** ** * * *** *** * * * * * * *
consensus_6818#0 TGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGC 475
consensus_6818#2 TGCGTCTGCCGCTTCAACNAACCTCGG-GCGATTCT------------------------ 565
consensus_6818#1 TGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCG 306
consensus_6818#3 TGCAGCTCCCA----GAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGC 287
*** ** ** * * *
consensus_6818#0 ATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACA 535
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 GGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGA 366
consensus_6818#3 ATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACA 347
consensus_6818#0 TCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAG 595
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 CAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCA 426
consensus_6818#3 TCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAG 407
consensus_6818#0 CAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACC 655
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 ATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCAC 486
consensus_6818#3 CAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACC 467
consensus_6818#0 CGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAA 715
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 CACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCC 546
consensus_6818#3 CGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA------ 521
consensus_6818#0 GGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT--------- 766
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 TTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCC 606
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 ------------------------------------------------------------
consensus_6818#2 ------------------------------------------------------------
consensus_6818#1 NCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGC 666
consensus_6818#3 ------------------------------------------------------------
consensus_6818#0 -------------------------
consensus_6818#2 -------------------------
consensus_6818#1 CGCCCCCTGNGCCTGCGCTCGCGCC 691
consensus_6818#3 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||