|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1192 fasta sequence
[CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTTCTCCTCCTTCAGGATGGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCGTTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGCACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTACCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCCGGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCTTTTCCGGGAGCAGTAAGCCCAATGACATTAGGCTGTCCACCCTGTGTTCCAGGTTGCACTTGACCGGTACCGACTGGACTGGTAGCACCAGCTCCTCCAGGTGCAGGTTGACCGACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGAGCACCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGGTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCT-GAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATCCGAC]
[-] EMBL BM624706 [CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTTCTCCTCCTTCAGGATGGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCGTTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGCACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTACCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCCGGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCTTTTCCGGGAGCAGTAAGCCCAATGACATTAGGCTGTCCACCCTGTGTTCCAGGTTGCACTTGACCGGTACCGACTGGACTGGTAGCACCAGCTCCTCCAGGTGCAGGTTGACCGACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGAGCACCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG ]
[+] EMBL BM604150 [ ccgCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTGGGTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCT GAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATCCGAC]
[+] EMBL BM604925 [ ccgGGCAGCTTGTTGTTTGTTATACCATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAATTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTATTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAATCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCTGGAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATC ]
consensusID : consensus_6825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence
[CTACTGGAAGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG----GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCT]
[+] EMBL CNS09PK5 [CTACTGGAAGTTCGGTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAA GCCACATGTGCCCGA ]
[+] EMBL CNS09652 [ ACTGGAAGTTC TTTTCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCTTTCATCGCAGGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGCTTCTCCGCCGGGGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACT AACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTGCGTGTGTGCGTGTGCACGTACCGAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGGTCGTTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT ]
[+] EMBL CNS09QUJ [ AGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTTACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTTCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6825#0 CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTT 60
consensus_6825#1 CTACTGG-AAGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATT--TCCCGGCCCTT 57
* ** ** * * * * * **** * ** ** ** *** * * **
consensus_6825#0 CTCCTCCTTCAGGAT--GGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCG 118
consensus_6825#1 CATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCAC 117
* * * ** ** * * * * * ***** * * * **
consensus_6825#0 TTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGC 178
consensus_6825#1 TTTACATCCACAATG-----------GCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGA 166
** * * **** ***** * ** ** *
consensus_6825#0 ACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTA 238
consensus_6825#1 AGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGT---GCTTCGCA 223
* * ** * * * * * ** * **** ** * * * * * * *
consensus_6825#0 CCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCC 298
consensus_6825#1 AGCTTGGCAACAGCATCTCG------CCCACGGTGGAGCTCGTGAAGAATGGTGACGAGT 277
*** ** ** ** ** * **** * * * * * **
consensus_6825#0 GGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCT 358
consensus_6825#1 ACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGG 337
** *** * * ****** ** * * * * * * **
consensus_6825#0 TTTCCGG-GAGCAGTAAGCCCAATGACAT-TAGGCTGTCCACCCTGTGTTCCAGGTTGCA 416
consensus_6825#1 AGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCA 397
* ** *** * * * * *** * * * * * *** * * ***
consensus_6825#0 CTTGACCGGTAC-CGACTGGACTGGTAGCA---CCAGCTCCTCCAGGTGCAGGTTGACCG 472
consensus_6825#1 ACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTG 457
* * * * *** ** ** * * * * * * * ** *** ** *
consensus_6825#0 ACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGA 532
consensus_6825#1 -CCACCGATCTGAC--CGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACA 514
* * * ** * ** ***** * * ** ** ** * * * * *
consensus_6825#0 GCACCGGACGCGTGGG--CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCG---G 587
consensus_6825#1 AGGCCGTCTAAGAAGGACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCG 574
*** * ** ** ** * * *** * * ** * ** * *
consensus_6825#0 GTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCC 647
consensus_6825#1 ATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTC- 633
* * * * * * * * ** * **** ** * ****
consensus_6825#0 TGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTG-CTGATGCACATGTAGGACA 706
consensus_6825#1 -GCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGA 692
* * * **** ** * * ** * * * * * ** *** *
consensus_6825#0 GCTTCGTGTCCGCGATGAAG---TGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCT 763
consensus_6825#1 AACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGC---GGTTGCAA 749
* * *** ** * ** ** *** * * * * ** *
consensus_6825#0 CGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATC-TTGTCA 822
consensus_6825#1 AAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGG 809
** * * * **** * ** ** * * * * * * **
consensus_6825#0 ATCCGGACAGATCGACACTGGAGGT-CA-GTTTTGAGGATGTGGAAAATTACAACCAAAC 880
consensus_6825#1 AGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGC 869
* * * * *** ** ** ** ** ** ** * * * *** * * *
consensus_6825#0 ATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGT 940
consensus_6825#1 GTTTTGCTCATTTGCGATCGG------TTATGTATATATTTCGTAC--GAAATATTATGA 921
** * * **** *** * * ** ***** * * * *
consensus_6825#0 GTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTT 1000
consensus_6825#1 TTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAA---AAAAAAGGCCACATGT-GCC 977
* ** * * * * * * * ** * ****** *** ** * ** * * *
consensus_6825#0 TGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCT 1060
consensus_6825#1 CGAGCT------------------------------------------------------ 983
* *
consensus_6825#0 GATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCTGAGCTGGTGTTGGG 1120
consensus_6825#1 ------------------------------------------------------------
consensus_6825#0 AACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTT 1180
consensus_6825#1 ------------------------------------------------------------
consensus_6825#0 TACAAATCCGAC 1192
consensus_6825#1 ------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||