cluster # 6830

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Anopheles gambiae
cluster # 6830 cluster # 6830 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6830#0 length = 947 sequences # 5

consensus_6830#1 length = 452 sequences # 1

consensusID : consensus_6830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 947
fasta sequence

                              [GATCCCCCGAGGTTAACGAAACATCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAGACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTGATAATATCGCGCAATAAATATAACTCGACAGTTGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATCGGGACATGGTAGCAGAAC---AAAAAAAAAACCCGCTATTAAACCACGACTACACAACCAAAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGGGCTACTAATATTACATTAAAGAAAAAAACAACTGGACAGAAAACAAAGAGTGTTACAAACAAGCAACCTAAACCATGTAGTGTGTCATTGTGACCCCCCCCTCACGCCCCTCCCCTCCAACACCCCATTTCTCCCCTGCTCCCTTCACCAGGAACATTGTTGTGAAATATTGGCAAACGCATATTGGAGTGGCAGCGGCAAAGCCCGCACACCGTGTGCCCCTCGGTCCG]

[+] EMBL AL692246             [GATCCCCCGAGGTTAACGAAACATCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAGACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTGATAATATCGCGCAATAAATATAACTCGACAGTTGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTA CGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGG GATCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX609570             [                                                                                      CGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTGATAATATCGCGCAATAAATATAACTCGACAGTTGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATCGGGACATGGTAGCAGAAC   AAAAAAAAAACCCGCTATTAAACCACGACTACACAACCAAAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGGGCTACTAATATTACATTAAAGAAAAAAACAACTG                                                                                                                                                                                                    ]
[+] EMBL BX613474             [                                                                                                                                                      ACAGTTGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATCGGGACATGGTAGCAGAAC   AAAAAAAAAACCCGCTATTAAACCACGACTACACAACCAAAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGGGCTACTAATATTACATTAAAGAAAAAAACAACTGGACAGAAAACAAAGAGTGTTACA                                                                                                                                                                             ]
[+] EMBL BM586542             [                                                                                                                                                                                               ccgCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATCGGGACATAGTAGCAGAACAAAAAAAAAAAAACACGCTATTAAACCACGACTACACAACCAAAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTTCCTGGTCAGGGGGAGGGCTACTAATATTACATTAAAGAAAc                                                                                                                                                                                                             ]
[+] EMBL BX609695             [                                                                                                                                                                                                                                                                                                  GAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATCGGGACATGGTAGCAGAAC   AAAAAAAAAACCCGCTATTAAACCACGACTACACAACCAAAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGGGCTACTAATATTACATTAAAGAAAAAAACAACTGGACAGAAAACAAAGAGTGTTACAAACAAGCAACCTAAACCATGTAGTGTGTCATTGTGACCCCCCCCTCACGCCCCTCCCCTCCAACACCCCATTTCTCCCCTGCTCCCTTCACCAGGAACATTGTTGTGAAATATTGGCAAACGCATATTGGAGTGGCAGCGGCAAAGCCCGCACACCGTGTGCCCCTCGGTCCG]




>consensus_6830#0
GATCCCCCGAGGTTAACGAAACATCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAG
ACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAG
CTGATAATATCGCGCAATAAATATAACTCGACAGTTGCAGATGCAAAAAGAAATGAAGGT
ACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATAT
AAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACT
AGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACT
ATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAAAG
CTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAGTAT
TCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGTATC
GGGACATGGTAGCAGAACAAAAAAAAAACCCGCTATTAAACCACGACTACACAACCAAAA
CATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAAATT
TGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGGGCT
ACTAATATTACATTAAAGAAAAAAACAACTGGACAGAAAACAAAGAGTGTTACAAACAAG
CAACCTAAACCATGTAGTGTGTCATTGTGACCCCCCCCTCACGCCCCTCCCCTCCAACAC
CCCATTTCTCCCCTGCTCCCTTCACCAGGAACATTGTTGTGAAATATTGGCAAACGCATA
TTGGAGTGGCAGCGGCAAAGCCCGCACACCGTGTGCCCCTCGGTCCG

consensusID : consensus_6830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [ANCGGCACGAGGCGAAACATCCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAGACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTGATAATATCGCGCAATAAATACAACATCGACAGTGGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAANAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACCAAA]

[+] EMBL BX619398             [ANCGGCACGAGGCGAAACATCCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAGACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTGATAATATCGCGCAATAAATACAACATCGACAGTGGCAGATGCAAAAAGAAATGAAGGTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAANAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACCAAA]




>consensus_6830#1
ANCGGCACGAGGCGAAACATCCCGAAACATAAGGATAGTGGATAGGTGGAAGGACAGACA
TCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGAGCTG
ATAATATCGCGCAATAAATACAACATCGACAGTGGCAGATGCAAAAAGAAATGAAGGTAC
AGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATATATAA
ATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTACTAG
CGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACACTAT
TTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAANAGC
TAGAGAGAGAGAGAGAAAGTAGCTCTACCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6830#0      GATCCCCCGAGGTTAACGAAACATCC-GAAACATAAGGATAGTGGATAGGTGGAAGGACA 59
consensus_6830#1      ANCGGCACGAGG----CGAAACATCCCGAAACATAAGGATAGTGGATAGGTGGAAGGACA 56
                           * *****    ********** *********************************

consensus_6830#0      GACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGA 119
consensus_6830#1      GACATCAAAAGAAGGAAGACAAACGAGCGAGTAAAACTTGGGGAAAATGGGGCGAGCAGA 116
                      ************************************************************

consensus_6830#0      GCTGATAATATCGCGCAATAAATATAAC-TCGACAGTTGCAGATGCAAAAAGAAATGAAG 178
consensus_6830#1      GCTGATAATATCGCGCAATAAATACAACATCGACAGTGGCAGATGCAAAAAGAAATGAAG 176
                      ************************ *** ******** **********************

consensus_6830#0      GTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATAT 238
consensus_6830#1      GTACAGACAGACGAATCGAGATGCGGAAACAATATACATATATACATAGATATATTATAT 236
                      ************************************************************

consensus_6830#0      ATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTA 298
consensus_6830#1      ATAAATGAGAAAGGAAACCAAAACTAGATATATATGACGATATACATAGAGCGAGATGTA 296
                      ************************************************************

consensus_6830#0      CTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACA 358
consensus_6830#1      CTAGCGAGTCATACGCGCAAGTGGTCACCAGTTCAAGCGCCAACACTACAGTTTCCAACA 356
                      ************************************************************

consensus_6830#0      CTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAA 418
consensus_6830#1      CTATTTTGCTCGATCTGTGTCGGCGATCTGGCGGCGCTTTAAGATCTGTTCAAGGATGAA 416
                      ************************************************************

consensus_6830#0      A-GCTAGAGAGAGAGAGAGAAAGTAGCTCTACAACTACTACACACGCAATGACAGTTCAG 477
consensus_6830#1      NAGCTAGAGAGAGAGAGAGAAAGTAGCTCTACCAAA------------------------ 452
                        ****************************** *                          

consensus_6830#0      TATTCTTTGCGCCCAGCGTTCCTGTGTGTCCTCTCAGCCCTCCCGCTGTAGTGTGTTTGT 537
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      ATCGGGACATGGTAGCAGAACAAAAAAAAAACCCGCTATTAAACCACGACTACACAACCA 597
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      AAACATGAGATGACAGATGAGCAGCAGCAAAAGGATACAGGCGAAATCATAACGTACGAA 657
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      ATTTGCGGACATATTCATATATACATACATATAGCTATCCCTTACCTGGTCAGGGGGAGG 717
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      GCTACTAATATTACATTAAAGAAAAAAACAACTGGACAGAAAACAAAGAGTGTTACAAAC 777
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      AAGCAACCTAAACCATGTAGTGTGTCATTGTGACCCCCCCCTCACGCCCCTCCCCTCCAA 837
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      CACCCCATTTCTCCCCTGCTCCCTTCACCAGGAACATTGTTGTGAAATATTGGCAAACGC 897
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      ATATTGGAGTGGCAGCGGCAAAGCCCGCACACCGTGTGCCCCTCGGTCCG 947
consensus_6830#1      --------------------------------------------------