These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [CCGCCCACGCGTCCGCACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAAAAAATAAAACAGCAAAAATAATCAGAGTTTCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGTCTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCGAAGGGAGTGCTACTATACGGTCCA] [+] EMBL BM610886 [CCGCCCACGCGTCCGCACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAAAAAATAAAACAGCAAAAATAATCAGAGTTTCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGTCTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCGAAGGGAGTGCTACTATACGGTCCA] [+] EMBL BM654585 [ cCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGC ] consensusID : consensus_6831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [GAATTCCCCGAGGTTACGAGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCTCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCAATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAACCCGGAAAAATGCCTTGGGGGAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGATTCCACANGGAAACACGTCCTCCGGTTGGTTTTTCCCCCGGTCTTTNGGCCAAACCGGGCGGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAACACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCTGCCGGGGTAAAAGGAACC] [+] EMBL AL694863 [GAATTCCCCGAGGTTACGAGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCTCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCAATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAACCCGGAAAAATGCCTTGGGGGAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGATTCCACANGGAAACACGTCCTCCGGTTGGTTTTTCCCCCGGTCTTTNGGCCAAACCGGGCGGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAACACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCTGCCGGGGTAAAAGGAACC] consensusID : consensus_6831#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence [GCGGCACGAGGGTGCGAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACC------CAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTACAANATCTGAACGAGTACGAAATGGTCATTGC-TTCGCATCTGGTGGTGCCAGAAAACATTAN] [+] EMBL BX619505 [GCGGCACGAGGGTGCGAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACC CAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTACAANATCTGAACGAGTACGAAATGGTCATTGC TTCGCATCTGGTGGTGCCAGAAAACATTAN] [+] EMBL BM594562 [ ccgGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTTCGC ] consensusID : consensus_6831#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACCCGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACAAAGGACGATACGCGTACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCAGCACTACGCAACCCAGCAGCAGCAGCATCAGCAGCAACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTACTCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATCGAGC] [+] EMBL BM584075 [CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACCCGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACAAAGGACGATACGCGTACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCAGCACTACGCAACCCAGCAGCAGCAGCATCAGCAGCAACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTACTCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6831#2 --GCGGCACGAGGGTGCG----AAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCA-GA 53 consensus_6831#3 ---CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGA 57 consensus_6831#0 ---CCGCCCACGCGTCCG----CACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAA 53 consensus_6831#1 GAATTCCCCGAGGTTACG----AGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCT-CA 55 * * * * ** * * * * * * consensus_6831#2 AAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACC 113 consensus_6831#3 AAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACC 117 consensus_6831#0 AAAATAAAA------CAGCAAAAA--------------TAATCAGAGTTTCGGCGAGACC 93 consensus_6831#1 TCGTCACCTACTACTCGGCAAAAT-----------GGCTCATCCGCAACCTGGACCCGTC 104 * * ** * * * * ** * consensus_6831#2 CGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACA--AAGGACGATACGCAT 171 consensus_6831#3 CGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACA--AAGGACGATACGCGT 175 consensus_6831#0 CGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACA--AAGGACGATACGCAT 151 consensus_6831#1 CAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCC 164 * * ** * * ** *** * * ** * * * * * ** ** consensus_6831#2 ACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCA-GCACTACGCAACCCAGCAGCA 230 consensus_6831#3 ACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCA-GCACTACGCAACCCAGCAGCA 234 consensus_6831#0 ACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCA-GCACTACGCAACCCAGCAGCA 210 consensus_6831#1 AACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCA 224 * * ** **** * *** * ** * * * * ** * ** consensus_6831#2 GCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACG 290 consensus_6831#3 GCAGCATCAGCAGCA---ACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCG 291 consensus_6831#0 GCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACG 270 consensus_6831#1 ATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAA---CCCGGAAAAATGCCTTGGGG 281 ** ** ** * ***** * * * * consensus_6831#2 CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTAC 348 consensus_6831#3 CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTAC 349 consensus_6831#0 CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTAC 328 consensus_6831#1 GAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGAT 341 *** ** * * ** ** * ** ** * * * * consensus_6831#2 TCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATC 408 consensus_6831#3 TCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATC 409 consensus_6831#0 TCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATC 388 consensus_6831#1 TCCACANGGAAACACGTCCTCCGGTTGG-TTTTTCCCCCGGTCTTTNGGCCAAACCGGGC 400 ** * * *** * *** *** * ** ** * consensus_6831#2 GAG--CATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTAC 466 consensus_6831#3 GAG--C------------------------------------------------------ 413 consensus_6831#0 GAG--CATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTAC 446 consensus_6831#1 GGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAAC 460 * * consensus_6831#2 AANATCTGAACGAGTACGAAATGGTCATTGCTTCGCAT-CTGGTGGTGCCAGAAAACATT 525 consensus_6831#3 ------------------------------------------------------------ consensus_6831#0 AAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCAT-CTGGTGGTGCCAGAAAACATT 505 consensus_6831#1 ACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCT 520 consensus_6831#2 AN---------------------------------------------------------- 527 consensus_6831#3 ------------------------------------------------------------ consensus_6831#0 ACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGT 565 consensus_6831#1 GCCGGGGTAAAAGGAACC------------------------------------------ 538 consensus_6831#2 ------------------------------------------------------------ consensus_6831#3 ------------------------------------------------------------ consensus_6831#0 CTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCG 625 consensus_6831#1 ------------------------------------------------------------ consensus_6831#2 ------------------------ consensus_6831#3 ------------------------ consensus_6831#0 AAGGGAGTGCTACTATACGGTCCA 649 consensus_6831#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||