These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1469 fasta sequence [CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCACGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCGCTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTGGAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTCCTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGATCGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCGCAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATCAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA------CACAC--ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGGAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTACTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT] [+] EMBL BM633599 [CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCACGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCGCTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTGGAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTCCTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGATCGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCGCAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATCAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA CACAC ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGT ] [+] EMBL BX609756 [ GGCCACCTTCAACTCACAGGAAAGTCGCTCCGGCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTA ] [+] EMBL BM591681 [ ccgAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATGTAACCGTCTGTAATGTAACTCA CACAC ACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGTATATGGTG TCCTGGAATGGCAGCATAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAATCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCCGTTCGGTTCGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGGGCAGTGAGACAAGGTGAAGGGCTGTAAGGAAAACGATTGCAACAGGAAGGGCCAACGTGGTGGAGCGC ] [+] EMBL BX617617 [ TATGGATGTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGTAGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGGAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTACTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT] [+] EMBL BX609647 [ TCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCATGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTAAGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCATTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGCCGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAGG AGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAATTGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCGTTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTTGGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATTCGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAAC ] consensusID : consensus_6832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CAGAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCACTAGCGCAATATACTACGACTCCTCCTAATAACATACTATACACTACNNCACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCTCTCACCTGCTCTCCACTTGACGCGCGAGCTACGCCTGGAANCAAAGCAGCCTGTTCANTACTTCCTCTTACCATATGCTCACGCACGCCAACGCTTGCCCAACAACTCAACTCCTACAA] [+] EMBL AL694875 [CAGAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATTAAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCGGCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAATTAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTACACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAAAGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCACTAGCGCAATATACTACGACTCCTCCTAATAACATACTATACACTACNNCACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCTCTCACCTGCTCTCCACTTGACGCGCGAGCTACGCCTGGAANCAAAGCAGCCTGTTCANTACTTCCTCTTACCATATGCTCACGCACGCCAACGCTTGCCCAACAACTCAACTCCTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6832#0 CCGGTTCTCGACGCCGGTGCGATGGTTGCGCTGGCGAAGAAATGGCGAACGGTGCCACCA 60 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CGCTACCATTGCGAAGCGGGCGCAATCACCCAGATGCACCGGATACCTTCGTCGGGCTCG 120 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CTGTACCTGCCGATCAAGACGAACGCTTGCAAGGGAACCGACACGGAGGTACGCTATCTG 180 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 GAGCATGTGCAGGCCGTCATCACGGCGAACGCCAGCAGACGTGGGGATTTGGAGCTGTTC 240 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CTCACCTCGCCGATGGGCACTAGATCAATGATACTGAGCAAACGGGCTAATGACGATGAT 300 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CGACGCGATGGCTTCACCAAATGGCCGTTCATGACGACCCACACCTGGGGCGAATATCCG 360 consensus_6832#1 ----------------------------------------------------------CA 2 * consensus_6832#0 CAGGGCACATGGATGTTGGAGGCCACCTTCAACTCGCAGGAAAGTCGCTCCGGCTGGATC 420 consensus_6832#1 GAATCCCCCGAGGTTTTGGAGCCCACCTTCAACTCACAGGAAAGTCGCTCCGNCTGGATT 62 * * * * * ****** ************* **************** ****** consensus_6832#0 AAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCG 480 consensus_6832#1 AAGGAGTTTTCGCTCGTGCTGCACGGTACCAAGGACCCGCCGTACCAAACGCTGTCACCG 122 ************************************************************ consensus_6832#0 GCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAAT 540 consensus_6832#1 GCTTCGCCCCACTCCAAGCTGGCGATTGTAAAGAAAGCTCACGAAGATAAGGACGGCAAT 182 ************************************************************ consensus_6832#0 TAAAATGTAACCGTCTGTAATGTAACTCACAC--------ACACACACACGTACACGTAC 592 consensus_6832#1 TAAAATATAACCGTCTGTAATGTAACTCACACTCTCACACATACACACACGTACACGTAC 242 ****** ************************* * ****************** consensus_6832#0 ACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAA 652 consensus_6832#1 ACAAATACCAACCCACAAACGTGCACACATATATACACCACACTGCTAAGACACGTATAA 302 ************************************************************ consensus_6832#0 AGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCA- 711 consensus_6832#1 AGACCTTCTACACAACCAGTACGCCCCAAAGGAATATGGTGGATCCTGGAATGGCAGCAC 362 *********************************************************** consensus_6832#0 TAGCGCATATATAGATCTCTATACATATATACATAGATATATATATTTATACATATGGAT 771 consensus_6832#1 TAGCGCA-ATATAC-------TACGACTCCTCCTAATAACATAC---TATACACTACNNC 411 ******* ***** *** * * ** * *** ****** consensus_6832#0 GTTTGTAGTATTTATGTTCATGAGGGGTAGCTGAGAAGAGCTGTATATCTCTTACCTTGT 831 consensus_6832#1 ACTACTACTACTACTTNCTACTANCACTTACTGCGNACTGCTCCNGCTACCCTACTCT-- 469 * ** ** * * * * * *** * * *** * * *** * consensus_6832#0 AGAGCAGCTTGCCAACATCATCTAATTCAATGGAAGCACGAACAACACTTTAAACCAGCA 891 consensus_6832#1 -------CTCACCTGCTC-------TCCACTTGACGCGCGAGCTACGCCTGGAANCAAAG 515 ** ** * * ** * ** ** *** * ** * * ** ** consensus_6832#0 TGTTAACCAACCCTTACCAACCTCCTACCGGGGTCAGTCTGGGAGGGTGTGGAACGTCTA 951 consensus_6832#1 ---CAGCCTGTTCANTACTTCCTCTTACCATA--TGCTCACGCACGCCAACGCTTGCCCA 570 * ** * * **** **** ** * * * * * * * consensus_6832#0 AGAAATGTGAACTGTGTGGGTGTGTGCGTGTGTGCGGCACCGAACACAAATTCAATCCCA 1011 consensus_6832#1 ACAACT-CAACTCCTACAA----------------------------------------- 588 * ** * * * consensus_6832#0 TTTTCGGTTCCGTTTGCGGTTAGCCCAGCTAGCTACACTCAGGTCTAGGTCTGGTTGGGC 1071 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CGGGACACTCCCGGCGCAGCGAGACAAGGTGAAGGGCTGTAAGGAAAACAATTGCAACAG 1131 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 GAAGGCCCAACGTGGTGGAGCGCACACCGTTCCGAGCGATGGACACCGTCCGGTTCCAAT 1191 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 TGTTGTCTATTTATACATAGCAGAGAGAAAGAGAGATAGGTGGAGAGAGTAGTGCACCCG 1251 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 TTATTACGTTTCCAAAGGAAGATTCTACCGATAGTTCCGCGTTGGGTTGTTGGGATTTTT 1311 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 GGTTACGTGTTTTAAATATCTATTTTGCTCCATCCGTTACTCCGTATCAGCTCCATCATT 1371 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CGTCCTCTAAGCGTATTGATTTGTATATAGACGTATAAAATACAAATGCAACTATATTTA 1431 consensus_6832#1 ------------------------------------------------------------ consensus_6832#0 CTAAAAACCAAGTATCTAGCAAGTGATGATTTCGTTGT 1469 consensus_6832#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||