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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1116 fasta sequence
[AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG-AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC-GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC]
[+] EMBL CNS08KZM [AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAAACAGAGCTAGACGAATTTAATCGTTGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTTAGTTACAAAAGAAAACCGGAACAACACTAAAT ]
[+] EMBL CNS08G4N [ AAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGCGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTAT ]
[+] EMBL CNS08UCB [ CAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAACGGCTAGAAGACGAAACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATTACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGTTGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCCGGCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAAC ]
[-] EMBL CNS08UCC [ ATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCCGCTGGCGAGGGCGCAAAAGTTTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTTGCTGGCGAACACCCTTACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACAAACAAGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTCGACTACGAAACGAGG AAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCA ]
[-] EMBL CNS08KZN [ CGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACAAACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCAGAGCTAGACGAATTTAATCGTTGACTACGAAACGAGGTTAAATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAAAATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGATGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGCAAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTACAACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAACAACACTAAATGCCC GCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTGACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGCTATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC]
consensusID : consensus_6835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAAAAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATCACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCAGTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTT]
[+] EMBL BM629966 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAAAAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGATCACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGCTGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGTAGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGCCTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGATGAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCTTCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTTCCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCAGTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGATAAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCTCGACATTCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6835#0 AAAGCAAATGAAGAGTGTATCAGACCTAAATGAATTTAATCAAC--GGCTAGAAGACGAA 58
consensus_6835#1 -------------------CCGCCCACGCGTCCGCCCACGCGTCCGGGCTAGAAGACGAA 41
* * * * * * **************
consensus_6835#0 ACGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGAT 118
consensus_6835#1 AAGTTCATGAAGCAGGTGATCAATTACTTGCAGATCGAAACAGGAGAAACTAGGGCGGAT 101
* **********************************************************
consensus_6835#0 TACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGC 178
consensus_6835#1 CACCTGATGAATAAATCGTTGGACCTTCTATTTAACCGACAATTCCTTACACAGTGCGGC 161
***********************************************************
consensus_6835#0 TGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGT 238
consensus_6835#1 TGGCGAGGGCGCAAAAGTGTATCGCTTCCTGGGTATAGGAAAATTCTAGAACTGTTCAGT 221
************************************************************
consensus_6835#0 AGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGC 298
consensus_6835#1 AGGTTGGGCGCGACGTACGGAGTAAACTTACCAGGATGCAAAGTGCGTGACTATTTTAGC 281
************************************************************
consensus_6835#0 CTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGAT 358
consensus_6835#1 CTTAAATGCAAAAATGCAAAGCGACGAGCTAACCAGCAAATGTTAGGAAAGGTTGTCGAT 341
************************************************************
consensus_6835#0 GAACAGCAAGGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCT 418
consensus_6835#1 GAACAACAAAGTGAATCAGAGGATGAAAGCACAGAACAAACTGGTGGTATACTGCCAGCT 401
***** *** **************************************************
consensus_6835#0 TCCTTCGCTGGCGAACACCCTCACAAGCGACGTATACCGGATGGCTCGGTGCGAGTAGTT 478
consensus_6835#1 TCCTTCGCTGGCGAACAGCCTCACAAGCGACGTATACCGGATGGGTCGGTGCGAGTAGTT 461
***************** ************************** ***************
consensus_6835#0 CCGCTTTGTTTAGCACACACTGGCTGCACATTCAATCTGAAGCAGGTTAGCAGCGAGCCA 538
consensus_6835#1 CCGCTTTGTTTAGCACACACTGGCTGTACGTTCAATCTGAAGCAGGTTAGCAGCGAGCCA 521
************************** ** ******************************
consensus_6835#0 GAG----CTAGACGAATTTAATCGTCGACTACGAAACGAGGAAAATATGAAGCAGGTGAT 594
consensus_6835#1 GTGTGTGCTAAACGAATTTAATCGTCGACTACGAAACGAGGAATATATGAAGCAGGTGAT 581
* * *** ******************************** ****************
consensus_6835#0 AAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCT 654
consensus_6835#1 AAACTACTTGCAGTTCGAGACGGGTGAAGAGCGGTCGGATCACTTGATGAATAAATCGCT 641
************************************************************
consensus_6835#0 CGACATTCTTTTCAATAGAAAATTCCTGGCAACCTGTACCTGGCGAGGGATTAACGGAAA 714
consensus_6835#1 CGACATTCTTTT------------------------------------------------ 653
************
consensus_6835#0 AATACCTTTTGTGGTGTATTCGAAAGTTCAAGAGTTGTTCGGCTGGCTGGGTGCGAAGGA 774
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 TGGGAAGCGATTATTGGGATGCACAGTTCGGGATTATTTCATTCTTAAACTGAAGAATGC 834
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 AAAGCGACGAGCCATGCTAGGAGTACAAAGCCACGAAATAACGGGTATTGGTATAGGTAC 894
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 AACATTAGAAGCAGAACATAGTTGTTGTAAATGAAGTGAGTTACAAAAGAAAACCGGAAC 954
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 AACACTAAATGCCCGCGATACAGTACTACAGCTAGTTGTTGAAATATGGCTCAACATTTG 1014
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 ACTACCGTATGCTATGCGACGATGAAGAGATCTATGGCAAATCACAAAGATTATTCGTGC 1074
consensus_6835#1 ------------------------------------------------------------
consensus_6835#0 TATAGTTTGTATGAAAATAAATGATAGAAATACAGCCAGTGC 1116
consensus_6835#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||