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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence
[AGCAGAATCGGCACGAGGTTGTATACACACAAAAAAACCCGTCTCAAATCCCGCACTCGTTTGTACAA-AATCTCCAACACCCTCTGCTCTGTGTGATCGCAAAATGAAATGAACAAACAAAAAAACAAACAAATTGCGCACCATCAACAACGTCGTCGTCGTCGTCGTCG-TCGGGCAGGTCATGAATCCGCTCGACGCTCAGTGCAACGTCCAGCGGGACGATGCCATCTGTGTGAGCCAGCTGAAGAACGCCAA-GGAGATTGACCGGGCGCTGCTGCAGGAGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGC-TTCTACCTC-TACCGCCCGGAGGAACTGTTCCAGCCGAACAC-GTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATTGACGAAATTTCGTACCTGTCCGCGCCGGCCCCG-CTGC-TGTCCCAGTACGACGACA-TTAACCCGGAGCAGT-TCTGCAACGGTGACAACCGGCCGGCCGACTGCGGTGCCAACTGCATGTGCACGCACAAGGTCGACATTCCGCTCAATGCCATCGTGGAGGTCGTTCTTGTCGACGAAGTCCAACAACCGAATCTGAGCCATCCGTTCCATCTGCACGGTTACGCGTACAACGTGATCGGTATTGGCCGCTCACCGGACTCGAACGTCAAGAAGATTAACCTGAAGCACGCGCTCGACCTCGATCGGCGCGGTCTGCTCCACCGGCAGTACAACCTGGCCCCGCTCAAGGACACCATTGCCGTCCCGAACAACGGATACGTCGTGCTGCGATTCCGTGCCGACAATCCAGGGATTCTGGCTGNTCCACTGTCACTTCCTGTTCCACATCGTGATAGGAAT]
[+] EMBL BX469444 [AGCAGAATCGGCACGAGGTTGTATACACACAAAAAAACCCGTCTCAAATCCCGCACTCGTTTGTACAACAATCTCCAACACCCTCTGCTCTGTGTGATCGCAAAATGAAATGAACAAACAAAAAAACAAACAAATTGCGCACCATCAACAACGTCGTCGTCGTCGTCGTCGNTCGGGCAGGTCATGAATCCGCTCGACGCTCAGTGCAACGTCCAGCGGGACGATGCCATCTGTGTGAGCCAGCTGAAGAACGCCAAGGGAGATTGACCGGGCGCTGCTGCAGGAGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGCGTTCTACCTCGTACCGCCCGGAGGAACTGTTCCAGCCGAACACGGTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATTGACGAAATTTCGTACCTGTCCGCGCCGGCCCCGNGTGCATGTCCCAGTACGACGACAGTTAACCCGGAGCAGTGTCTGCAACGGTGACAACCGGNCGGCCGACTGCGGT ]
[+] EMBL BX628072 [ ATCCCGCACTCGTTTGTACAA AATCTCCAACACCCTCTGCTCTGTGTGATCGCAAAATGAAATGAACAAACAAAAAAACAAACAAATTGCGCACCATCAACAACGTCGTCGTCGTCGTCGTCG TCGGGCAGGTCATGAATCCGCTCGACGCTCAGTGCAACGTCCAGCGGGACGATGCCATCTGTGTGAGCCAGCTGAAGAACGCCAA GGAGATTGACCGGGCGCTGCTGCAGGAGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGC TTCTACCTC TACCGCCCGGAGGAACTGTTCCAGCCGAACAC GTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATTGACGAAATTTCGTACCTGTCCGCGCCGGCCCCG CTGC TGTCCCAGTACGACGACA TTAACCCGGAGCAGT TCTGCAACGGTGACAACCGGCCGGCCGACTGCGGTGCCAACTGCATGTGCACGCACAAGGTCGACATTCCGCTCAATGCCATCGTGGAGGTCGTTCTTGTCGACGAAGTCCAACAACCGAATCTGAGCCATCCGTTCCATCTGCACGGTTACGCGTACAACGTGATCGGTATTGGCCGCTCACCGGACTCGAACGTCAAGAAGATTAACCTGAAGCACGCGCTCGACCTCGATCGGCGCGGTCTGCTCCACCGGCAGTACAACCTGGCCCCGCTCAA ]
[+] EMBL BX625059 [ AGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGC TTCTACCTC TACCGCCCGGAGGAACTGTTCCAGCCGAACAC GTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATTGACGAAATTTCGTACCTGTCCGCGCCGGCCCCG CTGC TGTCCCAGTACGACGACA TTAACCCGGAGCAGT TCTGCAACGGTGACAACCGGCCGGCCGACTGCGGTGCCAACTGCATGTGCACGCACAAGGTCGACATTCCGCTCAATGCCATCGTGGAGGTCGTTCTTGTCGACGAAGTCCAACAACCGAATCTGAGCCATCCGTTCCATCTGCACGGTTACGCGTACAACGTGATCGGTATTGGCCGCTCACCGGACTCGAACGTCAAGAAGATTAACCTGAAGCACGCGCTCGACCTCGATCGGCGCGGTCTGCTCCACCGGCAGTACAACCTGCCCCCGCTCAAGGACACCATTGCCGTCCCGAACAACGGATACGTCGTGCTGCGATTCCGTGCCGACAATCCAGGGATTCTGGCTGNTCCACTGTCACTTCCTGTTCCACATCGTGATAGGAAT]
consensusID : consensus_6836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CAGAATTCCCCGCAGGTTATTACGCCCGGGCGCCGCTATCGGTTCGCTATGATCAACGCGTTCGCTATCCGTCTGCCCGGCCAGGTTACGATCGAGGGACATGCGCTGACGGTGATTGCGACCGACGGCGTAGCCGGTGCATACCGGTGCAAGTCAACACCATCATCTCGTTCTCAGTGCGAACGTTACGATTTCGTCATCACCGTGACCAGCCTGGTCGGTGCGTACTGGATCCAGCTGCGNAGGACTCGGCGAGATGCGGCATCAAGCGTGCCCAGCAGCTGGNCATCCTGCGCTATGCTCGCGGCACCTACCAGCCTGCTCGCCGACCCCAACTACGACAGTCGGACTTCCGNAGGGCGTTGTCATGAATCCGCTCGAGCTCAGTGCAACGTCCAGCTGGGACGATGCCATCTGTGTNGAGGCCAGCTGAACGAACGCCAAGGCAGNATTGACCGGGCGCTGCTGCACGGCACGNAACGCCGGCACGTGAAGATTTCTCCTGCCGTTACGCTTCTACCCTACACGCCCGGCAGGAANCTGTNCCAGCCGAAACACGGTACAACCCGCTCATCCATGNCATCCGCCCCCGACCGGCAGCATCACTGCTCAATAAACAGCCTAGATATGACCGAACACTCNCCCG]
[+] EMBL AL694943 [CAGAATTCCCCGCAGGTTATTACGCCCGGGCGCCGCTATCGGTTCGCTATGATCAACGCGTTCGCTATCCGTCTGCCCGGCCAGGTTACGATCGAGGGACATGCGCTGACGGTGATTGCGACCGACGGCGTAGCCGGTGCATACCGGTGCAAGTCAACACCATCATCTCGTTCTCAGTGCGAACGTTACGATTTCGTCATCACCGTGACCAGCCTGGTCGGTGCGTACTGGATCCAGCTGCGNAGGACTCGGCGAGATGCGGCATCAAGCGTGCCCAGCAGCTGGNCATCCTGCGCTATGCTCGCGGCACCTACCAGCCTGCTCGCCGACCCCAACTACGACAGTCGGACTTCCGNAGGGCGTTGTCATGAATCCGCTCGAGCTCAGTGCAACGTCCAGCTGGGACGATGCCATCTGTGTNGAGGCCAGCTGAACGAACGCCAAGGCAGNATTGACCGGGCGCTGCTGCACGGCACGNAACGCCGGCACGTGAAGATTTCTCCTGCCGTTACGCTTCTACCCTACACGCCCGGCAGGAANCTGTNCCAGCCGAAACACGGTACAACCCGCTCATCCATGNCATCCGCCCCCGACCGGCAGCATCACTGCTCAATAAACAGCCTAGATATGACCGAACACTCNCCCG]
consensusID : consensus_6836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TTTCGTCATCACCGCTGACCAGCCGGTCGGTGCGTACTGGATCCAGCTGCGAGGACTCGTGCGAGTGCGGCATCAAGCGTGCCCAGCAGCTGGCCATCCTGCGCTATGCTCGCGGCCCCTACCAGCCTGCCTCGCCGCCCCCAACCTACGACGTCGGACTTCCGCAGGGCGTTGTCATGAATCCGCTCGACGCTCAGTGCAACGTCCAGCGGGACGATGCCATCTGTGTGAGCCAGCTGAAGAACGCCAAGGAGATTGACCGGGCGCTGCTGCAGGAGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGCTTCTACCTCTACCGCCCGGAGGAACTGTTCCAGCCGAACACGTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATNGACGAAATTTCGTACCTGTCCGCGCCGGCCCCGCTGCTGTCCCAGTACGACGACATTAACCCGGAGCAGTNNTGCAACGGTGACAACCGGCCCGCCGACTGCGGTGCCCACTGCATGTGCACGCACAAGGTCGACATTCCGCTCAATGCNATCG]
[+] EMBL BX619374 [TTTCGTCATCACCGCTGACCAGCCGGTCGGTGCGTACTGGATCCAGCTGCGAGGACTCGTGCGAGTGCGGCATCAAGCGTGCCCAGCAGCTGGCCATCCTGCGCTATGCTCGCGGCCCCTACCAGCCTGCCTCGCCGCCCCCAACCTACGACGTCGGACTTCCGCAGGGCGTTGTCATGAATCCGCTCGACGCTCAGTGCAACGTCCAGCGGGACGATGCCATCTGTGTGAGCCAGCTGAAGAACGCCAAGGAGATTGACCGGGCGCTGCTGCAGGAGAAGCCGGACGTGAAGATTTTCCTGCCGTTCCGCTTCTACCTCTACCGCCCGGAGGAACTGTTCCAGCCGAACACGTACAACCGTTTCCTGGTCGCCCCGACCGGAGATCATGTCATTTCGCTGATNGACGAAATTTCGTACCTGTCCGCGCCGGCCCCGCTGCTGTCCCAGTACGACGACATTAACCCGGAGCAGTNNTGCAACGGTGACAACCGGCCCGCCGACTGCGGTGCCCACTGCATGTGCACGCACAAGGTCGACATTCCGCTCAATGCNATCG]
consensusID : consensus_6836#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[CCGCTAACTCGCACCTGTACGACTTCGATCTGACCACGCACATCATGCTGGTGAGTGACTGGCTGCACGAGGACGCCGCTGAGCGCTACCCGGGCCGTCTGGCGGTGAACACCGGGCAGGATCCCGAATCGCTGCTGATCAACGGCAAGGGCCAGTTCCGTGACCCGAACACCGGCTTCATGACCAACACGCCGCTGGAGATCTTCACCATTACGCCTGGGCGCCGCTATCGGTTCCGCATGATCAACGCGTTCGCTTCCGTCTGCCCGGCCCAGGTTACGATTGAGGGACATGCGCTGACGGTGATTGCGACCGACGGCGAGCCGGTGCATCCGGTGCAAGTCAACACCATCATCTCGTTCTCAGGCGAACGTTACGATTTCGTCATCACCGCTGACCAGCCGGGTCGGTG]
[+] EMBL BM615684 [CCGCTAACTCGCACCTGTACGACTTCGATCTGACCACGCACATCATGCTGGTGAGTGACTGGCTGCACGAGGACGCCGCTGAGCGCTACCCGGGCCGTCTGGCGGTGAACACCGGGCAGGATCCCGAATCGCTGCTGATCAACGGCAAGGGCCAGTTCCGTGACCCGAACACCGGCTTCATGACCAACACGCCGCTGGAGATCTTCACCATTACGCCTGGGCGCCGCTATCGGTTCCGCATGATCAACGCGTTCGCTTCCGTCTGCCCGGCCCAGGTTACGATTGAGGGACATGCGCTGACGGTGATTGCGACCGACGGCGAGCCGGTGCATCCGGTGCAAGTCAACACCATCATCTCGTTCTCAGGCGAACGTTACGATTTCGTCATCACCGCTGACCAGCCGGGTCGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6836#1 ------------------------------------------------------------
consensus_6836#3 ------------------------------------------------------------
consensus_6836#0 ----AGCAGAATCGGC-ACGAGGTTGTATACACACAAAAAAACCCGTCTCAAATCCCGCA 55
consensus_6836#2 TTTCGTCATCACCGCTGACCAGCCGGTCGGTGCGTACTGGATCCAGCTGCGA-----GGA 55
consensus_6836#1 --CAGAATTCCCCGCAGGTTATTACGCCCGGGCGCCGCTATCGGTTCGCTATGATCAACG 58
consensus_6836#3 ---------------------------------------------CCGCTAACTCGCACC 15
consensus_6836#0 CTCGTTTGTACAAAATCTCCAACACCCTCTGCTCTGTGTGATCGCAAAATGAAATGAACA 115
consensus_6836#2 CTCGTGCGAGTGCGGCATCAAGCGTGCCCAGCAGC---TGGCCATCCTGCGCTATGCTCG 112
*
consensus_6836#1 CGTTCGCTATCCGTCTGCCCGGCCAG-GTTACGATCGAGGGACATGC-GCTGACGGTGAT 116
consensus_6836#3 TGTACGACTTCGATCTGACCACGCAC-ATCATGCTGGTGAGTGACTG-GCTGCACGAGGA 73
consensus_6836#0 AACAAAAAAACAAACAAATTGCGCACCATCAACAACGTCGTCGTCGTCGTCGTCGTCGGG 175
consensus_6836#2 CGGCCCCTACCAGCCTGCCTCGCCGCCCCCAAC--CTACGACGTCGG-ACTTCCGCAGGG 169
* * * * *
consensus_6836#1 TGCGACCGACGGCGTAGCCGGTGCATACCGGTGCAAGTCAACACCATCATCTCGTTCTCA 176
consensus_6836#3 CGCCGCTGAGCGC-TACCCGGGCCGTCTGGCGGTGAACACCGGGCAGGATCCCGAA-TCG 131
consensus_6836#0 CAG-GTCATGAATCCGCTCGA--CGCTCAGTG--CAACGTCCAGCGGGACGATGCCATCT 230
consensus_6836#2 CGTTGTCATGAATCCGCTCGA--CGCTCAGTG--CAACGTCCAGCGGGACGATGCCATCT 225
** * * * * * * **
consensus_6836#1 GTGCGAACGTTACGAT-TTCGTCATCACCGTGACCAGCCTGGTCGGTGCGTACTGGATCC 235
consensus_6836#3 CTGCTGATCAACGGCA-AGGGCCAGTTCCGTGACCCGAACACCGGCTTCATGACCAACAC 190
consensus_6836#0 GTGTGAGCCAGCTGAAGAACGCCAAGGAGATTGACCGGGCGCT-GCTGCAGGAGAAGCCG 289
consensus_6836#2 GTGTGAGCCAGCTGAAGAACGCCAAGGAGATTGACCGGGCGCT-GCTGCAGGAGAAGCCG 284
** * * ** * * * * * *
consensus_6836#1 AGCTGCGNAGGACTCGGCGAGATGCGGCAT-CAAGCGTG--CCCAGCAGCTGGNCATCCT 292
consensus_6836#3 GCCGCTGGAGATCTTCAC---------CAT-TACGCCTG--GGC-GCCGCTATCGGTTCC 237
consensus_6836#0 GACG-TGAAGATTTTCCTGCCGTTCCGCTTCTACCTCTACCGCCCGGAGGAACTGTTCCA 348
consensus_6836#2 GACG-TGAAGATTTTCCTGCCGTTCCGCTTCTACCTCTACCGCCCGGAGGAACTGTTCCA 343
* * ** * * * * * * * * * *
consensus_6836#1 GCGCTATGCTCGCGGCACCTACCAGCCTGCTCGCCGACCC-CAACTACGAC-AGTCGGAC 350
consensus_6836#3 GCATGATCAACGCGTTCGCTTCC-GTCTGC---CCGGCCC-AGGTTACGAT-TGAGGGAC 291
consensus_6836#0 GCCGAACACGTACAACCGTTTCCTGGTCGCC--CCGACCGGAGATCATGTCATTTCGCTG 406
consensus_6836#2 GCCGAACACGTACAACCGTTTCCTGGTCGCC--CCGACCGGAGATCATGTCATTTCGCTG 401
** * * * ** * ** *** ** * * *
consensus_6836#1 TTCCGNAGGGCGTTGTCATGAATCCGCTCGAGCTCAGTGCAAC--GTCCAGCTGGGACGA 408
consensus_6836#3 ATGCGCTGACGGTGATTGCGACCGACGGCGAGC-CGGTGCATCCGGTGCAAGTCA-ACAC 349
consensus_6836#0 ATTGACGAAATTTCGTACCTGTCCGCGCCGGCCCCGCTGCTGTCCCAGTACGACG-ACAT 465
consensus_6836#2 ATNGACGAAATTTCGTACCTGTCCGCGCCGGCCCCGCTGCTGTCCCAGTACGACG-ACAT 460
* * * ** * * *** * **
consensus_6836#1 TGCCATCT-GTGTNGAGGCCAGCTGAACGAACGCCAAGGC-AGNATTG-ACCGGGCGCTG 465
consensus_6836#3 CATCATCTCGTTCTCAGGCGAACGTTACGATTTCGTCATC-ACCGCTG-ACCAGCCGGGT 407
consensus_6836#0 TAACCCGGAGCAGTTCTGCAACGGTGACAACCGGCCGGCCGACTGCGGTGCCAACTGCAT 525
consensus_6836#2 TAACCCGGAGCAGTNNTGCAACGGTGACAACCGGCCCGCCGACTGCGGTGCCCACTGCAT 520
* * ** * ** * * * * ** *
consensus_6836#1 CTGCACGGCACGNAACGCCGGCACG-TGAAGATTTCTCCTGCCGTTACGCTTCTACCCTA 524
consensus_6836#3 CGGTG------------------------------------------------------- 412
consensus_6836#0 GTGCACGCACAAGGTCGACATTCCGCTCAATGCCATCGTGGAGGTCGTTCTTGTCGACGA 585
consensus_6836#2 GTGCACGCACAAGGTCGACATTCCGCTCAATGCNATCG---------------------- 558
*
consensus_6836#1 CACGCCCGGCAGGAANCTGTNCCAGCCGAAACACGGTACAACCCGCTCATCCATGNCATC 584
consensus_6836#3 ------------------------------------------------------------
consensus_6836#0 AGTCCAACAACCGAATCTGAGCCATCCGTTCCATCTGCACGGTTACGCGTACAACGTGAT 645
consensus_6836#2 ------------------------------------------------------------
consensus_6836#1 CGCCCCCGACCGGCAGCATCACTGCTCAATAAACAGCCTAGATATGACCGAACACTCNCC 644
consensus_6836#3 ------------------------------------------------------------
consensus_6836#0 CGGTATTGGCCGCTCACCGGACTCGAACGTCAAGAAGATTAACCTGAAGCACGCGCTCGA 705
consensus_6836#2 ------------------------------------------------------------
consensus_6836#1 CG---------------------------------------------------------- 646
consensus_6836#3 ------------------------------------------------------------
consensus_6836#0 CCTCGATCGGCGCGGTCTGCTCCACCGGCAGTACAACCTGGCCCCGCTCAAGGACACCAT 765
consensus_6836#2 ------------------------------------------------------------
consensus_6836#1 ------------------------------------------------------------
consensus_6836#3 ------------------------------------------------------------
consensus_6836#0 TGCCGTCCCGAACAACGGATACGTCGTGCTGCGATTCCGTGCCGACAATCCAGGGATTCT 825
consensus_6836#2 ------------------------------------------------------------
consensus_6836#1 -------------------------------------------
consensus_6836#3 -------------------------------------------
consensus_6836#0 GGCTGNTCCACTGTCACTTCCTGTTCCACATCGTGATAGGAAT 868
consensus_6836#2 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||