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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence
[GAGCCGCGTGTTTGTGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAA-GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA-CAGCCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAGGAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCGAAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGACATGATCGTGTGCC]
[+] EMBL CNS08LDZ [GAGCCGCGTGTTTGTGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGTAGCATGAAGTACATACTCGTCACCGGTGGTGTGA CAGCGGCGTTGGCAAA GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA CAGCCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAG ]
[+] EMBL CNS08RSL [ cGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA CAGTCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAGGAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCGAAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGACATGATCGTGTGCC]
[+] EMBL BM614123 [ ccgGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAA GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAG CCGGTAAAGGACAACATCGTGCCGGAGGTGTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCG ]
consensusID : consensus_6837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGTTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAGCCGGTAAAGGACAACATCG]
[+] EMBL BM637563 [CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGTTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAGCCGGTAAAGGACAACATCG]
consensusID : consensus_6837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGAGGTTAGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTGTCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCCATACGAACACGGTAACGCAAACGGCTAGACGAAATAGTCCTCAACGAACGATAGACNCCGGAGACACGAGAACNGAGAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTTCGTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTACATAATCNNAAAACCACGAAGNGCGAACTTGACCGATGACCGGTAACATTCACTGTCAGGGAAACGCACANACAGCTAACCANACGTA]
[+] EMBL AL694949 [CCGAGGTTAGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTGTCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCCATACGAACACGGTAACGCAAACGGCTAGACGAAATAGTCCTCAACGAACGATAGACNCCGGAGACACGAGAACNGAGAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTTCGTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTACATAATCNNAAAACCACGAAGNGCGAACTTGACCGATGACCGGTAACATTCACTGTCAGGGAAACGCACANACAGCTAACCANACGTA]
consensusID : consensus_6837#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[CCGACGGGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTATCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGT]
[+] EMBL BM636612 [CCGACGGGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTATCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6837#0 GAGCCGCGTGTTTGTGG-TTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAA 59
consensus_6837#1 ---CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAA 57
consensus_6837#3 ------------------------------CCGACGGGCTAGACGGTTGGTTCGTTCGTA 30
consensus_6837#2 --------------------------CCGAGGTTAGC--TAGACGGTTGGTTCGTTCGTA 32
* *** ** *** * *
consensus_6837#0 AAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCC-ATTCCGTGCGGTGCGCCAC 118
consensus_6837#1 AAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCC-ATTCCGTGCGGTGCGCCAC 116
consensus_6837#3 CGCACAAACCACGC-TCTACCACCCTATCAACCACTTTCCCAAATCGTTCG-TACATTGA 88
consensus_6837#2 CGCACAAACCACGC-TCTACCACCCTGTCAACCACTTTCCCAAATCGTTCG-TACATTGA 90
* ** * * *** *** *** *** * *** ** * *
consensus_6837#0 TGTAGCTGCTGTTAGAAGGCAC-AGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 177
consensus_6837#1 TGTAGCTGCTGTTAGAAGGCAC-AGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 175
consensus_6837#3 CGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 148
consensus_6837#2 CGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 150
** * * ** *************************************
consensus_6837#0 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 237
consensus_6837#1 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 235
consensus_6837#3 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 208
consensus_6837#2 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 210
************************************************************
consensus_6837#0 ACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 297
consensus_6837#1 ACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 295
consensus_6837#3 ACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 268
consensus_6837#2 ACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 270
**************** *******************************************
consensus_6837#0 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 357
consensus_6837#1 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 355
consensus_6837#3 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 328
consensus_6837#2 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 330
************************************************************
consensus_6837#0 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 416
consensus_6837#1 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 414
consensus_6837#3 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 387
consensus_6837#2 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCC 390
******************************************* ****************
consensus_6837#0 ATACGAACACGGTGAGGTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 474
consensus_6837#1 ATACGAACACGGTGAGTTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 472
consensus_6837#3 ATACGAACACGGTGAGGTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 445
consensus_6837#2 ATACGAACACGGTAACGCAAACGG-CTAGACGAAATAGTCCTCAACGAACGATAGACNCC 449
************* * * ** ** ** * * * * * **
consensus_6837#0 GGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGC 534
consensus_6837#1 GGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGC 532
consensus_6837#3 GGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGC 505
consensus_6837#2 GGAGAC-ACGAGAACNGA--GAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTT-C 505
*** ** * *** * * * *** ** **** ** *
consensus_6837#0 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 594
consensus_6837#1 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 592
consensus_6837#3 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 565
consensus_6837#2 GTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTA--CATAATCNNAAAACCACG 563
* * ** *** * * ** * * * ** * ******
consensus_6837#0 CAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAACAGC 654
consensus_6837#1 CAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAG 652
consensus_6837#3 CAAGTGGT---------------------------------------------------- 573
consensus_6837#2 -AAGNG----CGAACTTGACCGATGACCGGTAACATTCACTGTCA-GGGAAACGCACANA 617
*** *
consensus_6837#0 CCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGT 714
consensus_6837#1 CCGGTAAAGGACAACATCG----------------------------------------- 671
consensus_6837#3 ------------------------------------------------------------
consensus_6837#2 CAGCTAACCANACGTA-------------------------------------------- 633
consensus_6837#0 GACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAG 774
consensus_6837#1 ------------------------------------------------------------
consensus_6837#3 ------------------------------------------------------------
consensus_6837#2 ------------------------------------------------------------
consensus_6837#0 GAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCG 834
consensus_6837#1 ------------------------------------------------------------
consensus_6837#3 ------------------------------------------------------------
consensus_6837#2 ------------------------------------------------------------
consensus_6837#0 AAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGAC 894
consensus_6837#1 ------------------------------------------------------------
consensus_6837#3 ------------------------------------------------------------
consensus_6837#2 ------------------------------------------------------------
consensus_6837#0 ATGATCGTGTGCC 907
consensus_6837#1 -------------
consensus_6837#3 -------------
consensus_6837#2 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||