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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1152 fasta sequence
[GAATCCCCCCGAGNTTAGCTGACCGAGGAGTNCTGCACGAGGAGCTGCATCCGCGCAAGCTGAACCTTTGGCCACAGTTCTCCAAACCGAAGGGACCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAGGTGGCGGAGGTTGCGTGGAAGTGGACTATGATGCCGATGCTAACGGTCCATTGACAGAGCCGCGACACACACTTTGTGAGCGCAAACTTCCACGCTTCCAAACCCATACCATTGCGCAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCACCCCCAACTTTTCATCGCATTTCGCATCGCATTGTGGCCAATACACTATTATGTGTAGTAAANCAGTANAAAATAAGTAGTTGTACTGTGTAGAAAATAACTTATTGAACCCCATNTTTACGTAGTTCAAAACAATGTGCACACAACATAACAACGAACCAAGAGTACCGATCGCGACGACCCCACTACCAACAAAGGAGCACGAAACGCAATGAAGCCGAAACCGAACCGAGTATNCCGACGCGCGCACGACCGATATACACGTANCAAACCGCCACAGCTACACGCACTCCACACACACNCCTNCCCTCCCCCTTCCCCACGGCCTCNCCAGGCCGGCCCCACACGCAACGGCCCAAACGGCCCCACACACACTGCTCATCCTGGCGCGCAACTTGGCGCAANACTTAACAACCCCACGGCGCCCAACCCTGCNCCACACTNCACCCCACACACCTCTGGNNCTCCCCCTCGCAACAACTCATCCACCCTNCCCGNCTTCACAGACCACAAAAGNAGCACNACACGATTGAACCCCCGACNCGCNTGGAAACAAACCCGGACGCGACCGGCNTAGGTNCAATTACCCCGCANNACGCTNCGGCCTAAGGAGAGAGTCTGCGACGCTCAAACGCCACGGTNCCCCCNCAAACACACACAACACNACNAACGAGCCCCAGCCGACTTCAAAGACGAGCACCCCGANCCAGCGCACNNCAACACGCGTACATTAACAGCCCANCGCGGNCAGCCCATTCAACACCCCCGGACCACCCGCACTCNCCAACCCANAGCCGCCGTCAGGCCAAAACCGATNCCCCAANACCCACGCNCCGCNAAACAC]
[+] EMBL AL694995 [GAATCCCCCCGAGNTTAGCTGACCGAGGAGTNCTGCACGAGGAGCTGCATCCGCGCAAGCTGAACCTTTGGCCACAGTTCTCCAAACCGAAGGGACCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAGGTGGCGGAGGTTGCGTGGAAGTGGACTATGATGCCGATGCTAACGGTCCATTGACAGAGCCGCGACACACACTTTGTGAGCGCAAACTTCCACGCTTCCAAACCCATACCATTGCGCAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCACCCCCAACTTTTCATCGCATTTCGCATCGCATTGTGGCCAATACACTATTATGTGTAGTAAANCAGTANAAAATAAGTAGTTGTACTGTGTAGAAAATAACTTATTGAACCCCATNTTTACGTAGTTCAAAACAATGTGCACACAACATAACAACGAACCAAGAGTACCGATCGCGACGACCCCACTACCAACAAAGGAGCACGAAACGCAATGAAGCCGAAACCGAACCGAGTATNCCGACGCGCGCACGACCGATATACACGTANCAAACCGCCACAGCTACACGCACTCCACACACACNCCTNCCCTCCCCCTTCCCCACGGCCTCNCCAGGCCGGCCCCACACGCAACGGCCCAAACGGCCCCACACACACTGCTCATCCTGGCGCGCAACTTGGCGCAANACTTAACAACCCCACGGCGCCCAACCCTGCNCCACACTNCACCCCACACACCTCTGGNNCTCCCCCTCGCAACAACTCATCCACCCTNCCCGNCTTCACAGACCACAAAAGNAGCACNACACGATTGAACCCCCGACNCGCNTGGAAACAAACCCGGACGCGACCGGCNTAGGTNCAATTACCCCGCANNACGCTNCGGCCTAAGGAGAGAGTCTGCGACGCTCAAACGCCACGGTNCCCCCNCAAACACACACAACACNACNAACGAGCCCCAGCCGACTTCAAAGACGAGCACCCCGANCCAGCGCACNNCAACACGCGTACATTAACAGCCCANCGCGGNCAGCCCATTCAACACCCCCGGACCACCCGCACTCNCCAACCCANAGCCGCCGTCAGGCCAAAACCGATNCCCCAANACCCACGCNCCGCNAAACAC]
consensusID : consensus_6839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 817 fasta sequence
[AAATACCGACCGACCACGCCCGCTACCATCTGTACATCTTCAAGCACCACCACGAGGGCAACTATCTCGAGAGCGTGGTGTTCGTGTACTCGATGCCCGGGTACAGCTGCTCGATCCGCGAGCGCATGATGTACTCCAGCTGCAAGGGCCCGTTTTCGGCGACGATCGAAAAGCACGGCATACAGGTGGCGAAAAAGCTCGAGATCGATAATGGTGCCGAGCTGACCGAGGAGTTCCTGCACGAGGAGCTGCATCCGCGCAAGCTGAACCTTCGGCCACAGTTCTCCAAACCGAAGGGACCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAAGTGGCGGAGGTTGCGTGGAAGTGGACTATGATGCCGATGCTAACGGTCCATTGACAGAGTCGCGACCACACACTTTGTGAGCGCAAACTTCCACGCTTCCAACTCCATACCATTGCGCAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCA-CCCCACCTTTTCATCGCATTTCGCATCGCATTGTGGCAATACACTATTATGTGTGTTTTTGTTTTTTTGTGTTGTCTGTGTAGAAAATAACTTATTGAACCCCATTTTACGTAGTTCAAAAATGTGCAAAAATAACAACGAACCAAGAGTACCGATCGCGACACCCCCTACAAAAAGGAGACGAACGCAATGAAGCCGAAACCGAACCGATTTTCCGACGGGACGACCGTTACACTACAACCGTTGTACAGTATCAAAAGTATTATAAAGTTCAGGCGCAAGANGCAAGCAAATGTTTGGGATG]
[+] EMBL BX609957 [AAATACCGACCGACCACGCCCGCTACCATCTGTACATCTTCAAGCACCACCACGAGGGCAACTATCTCGAGAGCGTGGTGTTCGTGTACTCGATGCCCGGGTACAGCTGCTCGATCCGCGAGCGCATGATGTACTCCAGCTGCAAGGGCCCGTTTTCGGCGACGATCGAAAAGCACGGCATACAGGTGGCGAAAAAGCTCGAGATCGATAATGGTGCCGAGCTGACCGAGGAGTTCCTGCACGAGGAGCTGCATCCGCGCAAGCTGAACCTTCGGCCACAGTTCTCCAAACCGAAGGGACCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAAGTGGCGGAGGTTGCGTGGAAGTGGACTATGATGCCGATGCTAACGGTCCATTGACAGAGTCGCGACCACACACTTTGTGAGCGCAAACTTCCACGCTTCCAACTCCATACCATTGCGCAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCA CCCCACCTTTTCATCGCATTTCGCATCGCATTGTGGCAATACACTATTATGTGTGTTTTTGTTTTTTTGTGTTGTCTGTGTAGAAAATAACTTATTGAACCCCATTTTACGTAGTTC ]
[+] EMBL BX622490 [ GTGCCGAGCTGACCGAGGAGTTCCTGCACGAGGAGCTGCATCCGCGCAAGCTGAACCTTCGACCACAGTTCTCCAAACCGAAGGGACCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAGTTGGCGGAGGTTGCGTGGAAGTGGACTATGATGCCGATGCTAACGGTCCATTGACAGAGCCGCGACCACACACTTTGTGAGCGCCAACTTCCACGCTACC ACCCCATACCATTGCGCAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCACCCCCACCTTTTCATCGCATTTCGCATCGCATTGTGGCAATACACTATTATGTGTGTTTTTGTTTTTTTGTGTTGTCTGTGTAGAAAATAACTTATTGAACCCCATTTTACGTAGTTCAAAAATGTGCAAAAATAACAACGAACCAAGAGTACCGATCGCGACACCCCCTACAAAAAGGAGACGAACGCAATGAAGCCGAAACCGAACCGATTTTCCGACGGGACGACCGTTACACTACAACCGTTGTACAGTATCAAAAGTATTATAAAGTTCAGGCGCAAGANGCAAGCAAATGTTTGGGATG]
consensusID : consensus_6839#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 527 fasta sequence
[TGAAGCCGAAACCGAACCAATTTTCCGACTACAACCGTTGTACAGTATCAAAAGTATTATAAAGTTCAGGCGCAAGAGGCAAGCAAATGTTTGGGATGGGAATTAAACAAGGCAAGTGAAAATTACGAAAACGTCTCCCTCGAATTTCTCGTTACAAAACAAATACCAAATGAACGGCGTGTATCGACTGCTGGGTGGGGTAGCGTCCAAGAAGCAAGCCGCTAAGCCACGACAAGTATACGGGCATACCGTCGTTAAACGTGCAGCCATGGCTTACAGGGAAGGCATCAGCATACTCATCATAAAATTGTACGATTAGGTTCGATAGCTCCCTAGCGAGCGCTTTGACGGTTTGAATGTCCGCGTTAGTATTTTGGAAAAAATCGTATCGTAGAATGGCTATAAATTATGAGTTGTAAGGCGTGCTTTTACCACAAGCAACTACTTATTCTGCCGTTTGCAAATGCCAGCTCAAACCTATCCAATCAAACCCCTTCATTAACAATCGAACTGAATAAAATATTATA]
[-] EMBL BX611703 [TGAAGCCGAAACCGAACCAATTTTCCGACTACAACCGTTGTACAGTATCAAAAGTATTATAAAGTTCAGGCGCAAGAGGCAAGCAAATGTTTGGGATGGGAATTAAACAAGGCAAGTGAAAATTACGAAAACGTCTCCCTCGAATTTCTCGTTACAAAACAAATACCAAATGAACGGCGTGTATCGACTGCTGGGTGGGGTAGCGTCCAAGAAGCAAGCCGCTAAGCCACGACAAGTATACGGGCATACCGTCGTTAAACGTGCAGCCATGGCTTACAGGGAAGGCATCAGCATACTCATCATAAAATTGTACGATTAGGTTCGATAGCTCCCTAGCGAGCGCTTTGACGGTTTGAATGTCCGCGTTAGTATTTTGGAAAAAATCGTATCGTAGAATGGCTATAAATTATGAGTTGTAAGGCGTGCTTTTACCACAAGCAACTACTTATTCTGCCGTTTGCAAATGCCAGCTCAAACCTATCCAATCAAACCCCTTCATTAACAATCGAACTGAATAAAATATTATA]
[-] EMBL BX611609 [ ATAAAGTTCAGGCGCAAGAGGCAAGCAAATGTTTGGGATGGGAATTAAACAAGGCAAGTGAAAATTATGAAAACGTCTCCCTCGAATTTCTCGTTACAAAACAAATACCAAATGAACGGCGTGTATCGACTGCTGGGTGGGGTAGCGTCCAAGAAGCAAGCCGCTAAGCCACGACAAGTATACGGGCATACCGTCGTTAAACGTGCAGCCATGGCTTACAGGGAAGGCATCAGCATACTCATCATAAAATTGTACGATTAGGTTCGATAGCTCCCTAGCGAGCGCTTTGACGGTTTGAATGTCCGCGTTAGTATTTTGGAAAAAATCGTATCGTAGAATGGCTATAAATTATGAGTTGTAAGGCGTGCTTTTACCACAAGCAACTACTTATTCTGCCGTTTGCAAATGCCAGCTCAAACCTATCCAATCAAACCCCTTCATTAACAATCGAACTGAATAAAATATTATA]
[+] EMBL BX611704 [ ATGTTTGGGATGGGAATTAAACAAGGCAAGTGAAAATTACGAAAACGTCTCCCTCGAATTTCTCGTTACAAAACAAATACCAAATGAACGGCGTGTATCGACTGCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6839#0 ------------------------------------------------------------
consensus_6839#1 AAATACCGACCGACCACGCCCGCTACCATCTGTACATCTTCAAGCACCACCACGAGGGCA 60
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 ------------------------------------------------------------
consensus_6839#1 ACTATCTCGAGAGCGTGGTGTTCGTGTACTCGATGCCCGGGTACAGCTGCTCGATCCGCG 120
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 ------------------------------------------------------------
consensus_6839#1 AGCGCATGATGTACTCCAGCTGCAAGGGCCCGTTTTCGGCGACGATCGAAAAGCACGGCA 180
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 ---------------------GAATCCCC--CCGAGNTTAGCTGACCGAGGAGTNC-TGC 36
consensus_6839#1 TACAGGTGGCGAAAAAGCTCGAGATCGATAATGGTGCCGAGCTGACCGAGGAGTTCCTGC 240
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 ACGAGGAGCTGCATCCGCGCAAGCTGAACCTTTGGCCACAGTTCTCCAA-ACCGAAGGGA 95
consensus_6839#1 ACGAGGAGCTGCATCCGCGCAAGCTGAACCTTCGGCCACAGTTCTCCAA-ACCGAAGGGA 299
consensus_6839#2 ---TGAAGCCGAAACCGAACCAATTTT-CCGACTACAACCGTTGTACAGTATCAAAAGTA 56
* *** * * *** * * * ** * ** *** * ** * * ** * *
consensus_6839#0 CCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAGGT 155
consensus_6839#1 CCGCCTAGCCGCGGTGCTAAAAGACTGACCAAACCACAGGCTGTTGAGTAAGGCGGAAGT 359
consensus_6839#2 TTATAAAGTTCAGGCGC-AAGAGGCAAGCAAATGTTTGGGATGG-GAATTAAACAAGGCA 114
** ** ** ** ** * * ** ** ** ** * * *
consensus_6839#0 GGCGGAGGTTGCGTGGAAGTGGACTATGA---TGCCGATGCTAACGGTCCATTGACAGAG 212
consensus_6839#1 GGCGGAGGTTGCGTGGAAGTGGACTATGA---TGCCGATGCTAACGGTCCATTGACAGAG 416
consensus_6839#2 AGTGAAAATTACGAAAACGTCTCCCTCGAATTTCTCGTTACAAAACAAATACCAAATGAA 174
* * * ** ** * ** * ** * ** * * ** * * **
consensus_6839#0 CCGCGAC-ACACACT-TTGTGAGCGCAAACTTCCACGCTTCCAAAC-CCATACCATTGCG 269
consensus_6839#1 TCGCGACCACACACT-TTGTGAGCGCAAACTTCCACGCTTCCAACT-CCATACCATTGCG 474
consensus_6839#2 CGGCGTGTATCGACTGCTGGGTGGGGTAGCGTCCAAGAAGCAAGCCGCTAAGCCACGACA 234
*** * *** ** * * * * * **** * * * * * *** *
consensus_6839#0 CAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCACCCCCAACTTTTCATCGCATT 329
consensus_6839#1 CAGGTGCTAGTAGCTAGGATCATCTGACCTGCCGACGCACCCC-ACCTTTTCATCGCATT 533
consensus_6839#2 AGTATACGGGCA--TACCGTCGTTAAACGTGCAGCCATGGCTT---ACAGGGAAGGCATC 289
* * * * ** ** * ** *** * * * * ****
consensus_6839#0 TCGCAT-CGCATTGTGGCCAATACACTATTATGTGTAGTAAANCAGTANAAAATAAGTAG 388
consensus_6839#1 TCGCAT-CGCATTGTGGC-AATACACTATTATGTGTGTT---TTTGTTTT---TTTGT-G 584
consensus_6839#2 A-GCATACTCATCATAAA-ATTGTACGATTAGGTTCGATAGCTCCCTAGCGAGCGCTTTG 347
**** * *** * * * ** **** ** * * * *
consensus_6839#0 TTGTACTG--TGTAGAAAATAACTTATTGAACCCCATNTTTACGTAGTTCAAAACAATGT 446
consensus_6839#1 TTGT-CTG--TGTAGAAAATAACTTATTGAACCCCATTTT-ACGTAGTTCAAAA--ATGT 638
consensus_6839#2 ACGGTTTGAATGTCCGCGTTAGTATTTTGGAAAAAATCGTATCGTAG--------AATGG 399
* ** *** ** * *** * ** * ***** ***
consensus_6839#0 GCACACAACATAACAACGAACCAAGAGTACCGATCGCGACGACCCCACTACCAACAAAGG 506
consensus_6839#1 GCA---AAAATAACAACGAACCAAGAGTACCGATCGCGACA--CCCCCTACAA--AAAGG 691
consensus_6839#2 CTA---TAAATTATGAGTTGTAAGGCGTGCTT-TTACCACAA-GCAACTACTTATTCTGC 454
* * ** * * * * ** * * * ** * **** *
consensus_6839#0 AGCACGAAACGCAATGA-AGCCGAAACCGAACCGAGTATNCCGACGCGCGCACGACCGAT 565
consensus_6839#1 AG-ACGAA-CGCAATGA-AGCCGAAACCGAACCGATT-TTCCGACGGGACGACCGTTACA 747
consensus_6839#2 CGTTTGCA----AATGCCAGCTCAAACCTATCCAATCAAACCCCTTCATTAACAATCGAA 510
* * * **** *** ***** * ** * ** **
consensus_6839#0 ATACA--CGTANCAAACCGCCACAGCTAC-ACGCACTCCACACACACNCCTNCCCTCCCC 622
consensus_6839#1 CTACAACCGTTGTACAGTATCAAAAGTATTATAAAGTTCAGGCGCAAGANGCAAGCAAAT 807
consensus_6839#2 CTGAA-------TAAAATATTATA------------------------------------ 527
* * * * * *
consensus_6839#0 CTTCCCCACGGCCTCNCCAGGCCGGCCCCACACGCAACGGCCCAAACGGCCCCACACACA 682
consensus_6839#1 GTTTGGGATG-------------------------------------------------- 817
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CTGCTCATCCTGGCGCGCAACTTGGCGCAANACTTAACAACCCCACGGCGCCCAACCCTG 742
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CNCCACACTNCACCCCACACACCTCTGGNNCTCCCCCTCGCAACAACTCATCCACCCTNC 802
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CCGNCTTCACAGACCACAAAAGNAGCACNACACGATTGAACCCCCGACNCGCNTGGAAAC 862
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 AAACCCGGACGCGACCGGCNTAGGTNCAATTACCCCGCANNACGCTNCGGCCTAAGGAGA 922
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 GAGTCTGCGACGCTCAAACGCCACGGTNCCCCCNCAAACACACACAACACNACNAACGAG 982
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CCCCAGCCGACTTCAAAGACGAGCACCCCGANCCAGCGCACNNCAACACGCGTACATTAA 1042
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CAGCCCANCGCGGNCAGCCCATTCAACACCCCCGGACCACCCGCACTCNCCAACCCANAG 1102
consensus_6839#1 ------------------------------------------------------------
consensus_6839#2 ------------------------------------------------------------
consensus_6839#0 CCGCCGTCAGGCCAAAACCGATNCCCCAANACCCACGCNCCGCNAAACAC 1152
consensus_6839#1 --------------------------------------------------
consensus_6839#2 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||