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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 914 fasta sequence
[TCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACTGAAGGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCCGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCAAACTTTCTCAGCGCTGGAGCGGCGGCACTGCGCGATTACGTCGGCAATACGACGACCGTGATGGGGCAGGTGTTCCGCGAGGTGGCACAGGTTGCCGTCGATCGTACCACGGCACCGGCCGTCGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCT-CGCTC-GAG-GTGT-TGAAGGAAGCGTTTAACTACGACGTGAATTCGAACACGGCAAGCTATCTGGAGAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGTTGGTGTCGCTTGCGAATAATTTCCCTACGGCCGTACGCTTACCGCAGTCTATGGGCGATTGAATATCTGCTTCCAGCAACCGTTCGAGAGGATGAGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTGCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGC]
[+] EMBL CNS0996P [TCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACTGAAGGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCCGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCAAACTTTCTCAGCGCTGGAGCGGCGGCACTGCGCGATTACGTCGGCAATACGACGACCGTGATGGGGCAGGTGTTCCGCGAGGTGGCACAGGTTGCCGTCGATCGTACCACGGCACCGGCCGTCGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCT CGCTC GAG GTGT TGAAGGAAGCGTTTAACTACGACGTGAATTCGAACACGGCAAGCTATCTGGAGAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGCCCCTCCCGGCTCATCGCAGCTGGTGTCGCTTGCG ]
[-] EMBL CNS09Q51 [ GGCACCGGCCGTCGTCTTCACCCCGGTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCT CGCTC GAG GTGT TGAAGGAAGCGTTTAACTACGACGTGAATTCGAACACGGCAAGCTATCTGGAGAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGTTGGTGTCGCTTGCGAATAATTTCCCTACGGCCGTACGCTTACCGCAGTCTATGGGCGATTGAATATCTGCTTCCAGCAACCGTTCGAGAGGATGAGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTGCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGC]
[+] EMBL CNS09Q50 [ CACAGTGGAACCGAAACCTATCCAGCTGCGCTCTGAGTGTGTGTGAAGGAAGCGTTTAACTACGACGTGAATTCGAACACGGCAAGCTATCTGGAGAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGTTGGTGTCGCTTGCGAATAATTT CCTACGGCCGTACG TTACCGCAGTCTATGGGCGATTGAATATCTGCTTCCAGCAACCGTTCGAGAGGATGAGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTT CGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGAT ]
consensusID : consensus_6846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[TTACAATTCACTTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAACCATCCACCGGAGAAGTGACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCTGTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGACTCTATAGCACTCTTGTTGGACAAATCCAACAGGAATGTCCAAGGAGCTTGTCCAAAAAGGGTGCCACAGAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCAAGCAAGTGTCCCACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTGAGCCATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATTTTTTTTTCTTGCTGTTTATCGTCTGCTGTTGTGTGCATCGTTAGCGCGAAGATTAAAAGATGGGGCAAGAAAGCTGTGTAGCGAGGTGTAAAAAAACAGGCTGCCCTGGGTGTGTGTACTTTGCATGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAACGATCAAGCATCAGCAATCAGTGTTAGGTTTTATGCGAAAGCGAGGATGGTGGAAGGCAGCAGGCGGCCAGCACCCAATCATC]
[+] EMBL AGA281459 [TTACAATTCACTTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAACCATCCACCGGAGAAGTGACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCTGTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGACTCTATAGCACTCTTGTTGGACAAATCCAACAGGAATGTCCAAGGAGCTTGTCCAAAAAGGGTGCCACAGAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCAAGCAAGTGTCCCACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTGAGCCATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATTTTTTTTTCTTGCTGTTTATCGTCTGCTGTTGTGTGCATCGTTAGCGCGAAGATTAAAAGATGGGGCAAGAAAGCTGTGTAGCGAGGTGTAAAAAAACAGGCTGCCCTGGGTGTGTGTACTTTGCATGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAACGATCAAGCATCAGCAATCAGTGTTAGGTTTTATGCGAAAGCGAGGATGGTGGAAGGCAGCAGGCGGCCAGCACCCAATCATC]
consensusID : consensus_6846#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[GCGGATGATTGAACAGCATCGTACCGACCACACCCATCCACCCACCTCCTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAACCATCCACCGGAGAAGTGACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCTGTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGACTCTATAGCACTCTTGTTGGACAAATCCAACAGGAATGTCCAAGGAGCTTGTCCAAAAAGGGTGCCACAGAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCAAGCAAGTGTCCCACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTGAGCCATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATTTTTTTTTCTTGCTGTTTATCGTCTGCTGTTGTGTGCATCGTTAGCGCGAAGATTAAAAGATGGGGCAAGAAAGCTGTGTAGCGAGGTGTAAAAAAACAGGCTGCCCTGGGTGTGTGTACTTTGCATGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAACGATCAAGCATCAGCAATCAGTG]
[+] EMBL BX617558 [GCGGATGATTGAACAGCATCGTACCGACCACACCCATCCACCCACCTCCTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAACCATCCACCGGAGAAGTGACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCTGTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGACTCTATAGCACTCTTGTTGGACAAATCCAACAGGAATGTCCAAGGAGCTTGTCCAAAAAGGGTGCCACAGAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCAAGCAAGTGTCCCACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTGAGCCATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATTTTTTTTTCTTGCTGTTTATCGTCTGCTGTTGTGTGCATCGTTAGCGCGAAGATTAAAAGATGGGGCAAGAAAGCTGTGTAGCGAGGTGTAAAAAAACAGGCTGCCCTGGGTGTGTGTACTTTGCATGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAACGATCAAGCATCAGCAATCAGTG]
consensusID : consensus_6846#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[TTTACGTACCGGAAAGACCCTCACAACCAACCAAGGATAGAGCAGGCTGGGGAGGAATACAGGCCAAATGCCAGCGCGCGTGTGTGTGAAGCCAGATAGTGAGTACATCCCGTGGCAATAGCGTTACCGGAACAAATGTTGGACAGCGGGTACATACTATTATTGAGCTTAATTTACCAGGGGTTTTTGTTACATTATTGCATTATTGCAATTGCAAAAAATCGAAACGAAACATGAATCCAACACAAGATGGGAAAACTGGGCAGGCAAACAACAACC]
[+] EMBL AGESTG1T7 [TTTACGTACCGGAAAGACCCTCACAACCAACCAAGGATAGAGCAGGCTGGGGAGGAATACAGGCCAAATGCCAGCGCGCGTGTGTGTGAAGCCAGATAGTGAGTACATCCCGTGGCAATAGCGTTACCGGAACAAATGTTGGACAGCGGGTACATACTATTATTGAGCTTAATTTACCAGGGGTTTTTGTTACATTATTGCATTATTGCAATTGCAAAAAATCGAAACGAAACATGAATCCAACACAAGATGGGAAAACTGGGCAGGCAAACAACAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6846#1 ------------------------------------------------------------
consensus_6846#2 ------------------------------------------------------------
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 TCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACTGAAGGA 60
consensus_6846#1 ------------------------------------------------------------
consensus_6846#2 ------------------------------------------------------------
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 AGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCCGCTTGCCAGTTCCGCC 120
consensus_6846#1 ------------------------------------------------------TTACAA 6
consensus_6846#2 -----------------GCGGATGATTGAACAGCATCGTACCGACCACACCCATCCACCC 43
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 ACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACG 180
consensus_6846#1 TTCACTTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAAC-CATCCACCGGAGAAGT 65
consensus_6846#2 ACCTCCTCCTCCAACTGCACCCAACCGATAGAAGAAAAAAAAC-CATCCACCGGAGAAGT 102
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 TCTTCAAACTTTCTCAGCGCTGGAGCGGCGGCACTGCGCGATTACGTCGGCAATACGACG 240
consensus_6846#1 GACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCT 125
consensus_6846#2 GACGTGATGGGTGGCCGCTACCACCCAGCTTACAGGTTTTTTCCAGAAGTTCTCATAGCT 162
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 ACCGTGATGGGGCAGGTGTTCCGCGAGGTGGCACAGGTTGCCGTCGATCGTACCACGGCA 300
consensus_6846#1 GTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGAC 185
consensus_6846#2 GTGGGACACTTTATTAACTCTTTCTTACGGGAAATGAACTTAATGTAATGGGAATTGGAC 222
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 CCGGCCGTCGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGA 360
consensus_6846#1 TCTATAGCACTCTTGTTGGACAAATCCAACAGGAA---TGTCCAAGGAGCTTGTCCAAAA 242
consensus_6846#2 TCTATAGCACTCTTGTTGGACAAATCCAACAGGAA---TGTCCAAGGAGCTTGTCCAAAA 279
consensus_6846#3 -------TTTACGTACCGGAAAGACCCT-CACAAC---CAACCAAGGA-TAGAGCAGGCT 48
consensus_6846#0 AACCTATCCAGCTCGCTCGAGGTGTTGAAGGAAGCGTTTAACTACGACGTGAATTCGAAC 420
* ** * * *
consensus_6846#1 AGGGTGCCACA-GAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCA 301
consensus_6846#2 AGGGTGCCACA-GAGTCCAATTTCCAACATATGAAGTTCACTTCCAATAAGATAAAGTCA 338
consensus_6846#3 GGGGAGGAATA-CAGGCCAAATGCCAGCGCGCG---TGTGTGTGAAGCCAGATAGTG--- 101
consensus_6846#0 ACGGCAAGCTATCTGGAGAAGTTGCGGAATGCG---TTCGGTCAAAACGTGCAAGAGCTG 477
** * * ** * * * * * * * *
consensus_6846#1 A-GCAAGTGTCC-CACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTG-AGCC 358
consensus_6846#2 A-GCAAGTGTCC-CACAAGTATGAGAACCCCTAGAAAACCCTGTATCATGCTGTG-AGCC 395
consensus_6846#3 A-GTA--CATCC-CGTGGCAATAGCGTTACCGGAACAA----ATGTTGGACAGCG-GGT- 151
consensus_6846#0 GCGGAAGTACTCGTGCGGTTGGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGAC 537
* * * * * * * * * *
consensus_6846#1 ATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATT-----TTTTTTTCTTGCTGT 413
consensus_6846#2 ATGTTTTAAAGTGTGTCGTAAAGTGTTAATTGTTTCGATT-----TTTTTTTCTTGCTGT 450
consensus_6846#3 ACATACTATTATTGAGCTTAATTTACCAGGGGTTTT--TG-----TTACATTATTGCATT 204
consensus_6846#0 GAATCTCGAAAATCAAGGCTCATCGCAGTTGGTGTCGCTTGCGAATAATTTCCCTACGGC 597
* ** * * * * * *
consensus_6846#1 TTATCGTCTGCTGTTGTGTGCAT-CGTTAGCGCGAAGA-TTAAAAGATGGGGCAAGAAAG 471
consensus_6846#2 TTATCGTCTGCTGTTGTGTGCAT-CGTTAGCGCGAAGA-TTAAAAGATGGGGCAAGAAAG 508
consensus_6846#3 ATTGCAATTGCAAAAAATCGAAA-CGA-AACATGAA----TCCAACACAAGATGGGAAAA 258
consensus_6846#0 CGTACGCTTACCGCAGTCTATGGGCGATTGAATATCTGCTTCCAGCAACCGTTCGAGAGG 657
* * * ** * * * * *
consensus_6846#1 CTGTGTAGCGAGGTGTAAAAAA--------ACAGGCTGCCCTGGGTGTGTGTACTTTGCA 523
consensus_6846#2 CTGTGTAGCGAGGTGTAAAAAA--------ACAGGCTGCCCTGGGTGTGTGTACTTTGCA 560
consensus_6846#3 CTGGGCAG----GCAAACAACA--------ACC--------------------------- 279
consensus_6846#0 ATGAGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTG 717
** * * * * **
consensus_6846#1 TGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAAC 583
consensus_6846#2 TGCGCAACCGTTAGTTTTCGGCCCCAATGGCGGGCATGATTACAACAGGCGAATGATAAC 620
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 CTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAAT 777
consensus_6846#1 GATCAAGCATCAGCAATCAGTGTTAGGTTTTATGCGAAAGCGAGGATGGTGGAAGGCAGC 643
consensus_6846#2 GATCAAGCATCAGCAATCAGTG-------------------------------------- 642
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 GATCGCGTATTGCAATTCGTTGCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTC 837
consensus_6846#1 AGGCGGCCAGCACCCAATCATC-------------------------------------- 665
consensus_6846#2 ------------------------------------------------------------
consensus_6846#3 ------------------------------------------------------------
consensus_6846#0 TGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGG 897
consensus_6846#1 -----------------
consensus_6846#2 -----------------
consensus_6846#3 -----------------
consensus_6846#0 AATAGCATTCGCAAGGC 914
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||