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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1126 fasta sequence
[CCGGCAACCCTTAGCGCAGCACTGGGCTAGAAAACGACACGAAAAGGTACACAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC-GTAGAAAGATTGCTTTCAATCCAAAACTACCCGTA--AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAG-AAG-GAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA-TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCCATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTGCGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAGCGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGTGATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGCGAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTCGTGCGACCGCAGACGG]
[+] EMBL BM638441 [CCGGCAACCCTTAGCGCAGCACTGGGCTAGAAAACGACACGAAAAGGTACACAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC GTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGAGCGAGGGAGAGATAAACAGATCACGTACTAGAAATTGAACAAGAATAGCAAAGTTCAATCATATTTGCATCGTGTATACTAATCCGTTTGTACAAGTGTATTGTGTAAAGTGTATTGAACGTACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGA GAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCC CGATCATTGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCA ]
[+] EMBL BM610985 [ ccgGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC GAAAGATTGCTTTCAATCCAAAACTACCCGTA AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGGATAGCAAAGTTCAAACAAATTTGCATCGTGTAAACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGTATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGG ]
[+] EMBL BM635178 [ ccgGTTTAAT GGTATAG TTTATTCTGCAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTA AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAG AAA GAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACG ]
[+] EMBL BM632564 [ ccG GAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCCATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTGCGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAGCGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGTGATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGCGAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTCGTGCGACCGCAGACGG]
[+] EMBL BM652520 [ ccgCTCCGATGCGCAGGTGAATGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACTTACAACGTGGTGGCCTTCTCCGAAATCATGCACATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGGGCAAGGAAAATATCTACGCCATCCTAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGGACGTGCGCGAAAAGGCGAAA ]
consensusID : consensus_6851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATGTGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGA]
[+] EMBL BM613576 [CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATGTGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6851#0 ----------------------CCGGCA-ACCCTTAGCG-CAGCACTGGGCTAGAAAACG 36
consensus_6851#1 CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCG 60
* *** **** * ** ** *** **
consensus_6851#0 ACACGAA---AAGGTACA-CAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAA 92
consensus_6851#1 GCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATG 120
**** * * **** * ** **** * * * * * **
consensus_6851#0 CGTTACGCAGCGTTAAATCG-GCACGGATTTATCGT-ACGTAGAAAGATTGCTTTCAATC 150
consensus_6851#1 TGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATC 180
**** ** ** ** * ** ** ** * *********************
consensus_6851#0 CAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACA 210
consensus_6851#1 CAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACA 240
************************************************************
consensus_6851#0 AGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTAT 270
consensus_6851#1 AGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTAT 300
************************************************************
consensus_6851#0 TGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGT 330
consensus_6851#1 TGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGT 360
************************************************************
consensus_6851#0 TTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCC 390
consensus_6851#1 TTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCC 420
************************************************************
consensus_6851#0 ACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAGGAGAGAGAGGATACT 450
consensus_6851#1 ACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACT 480
******** *********************************** ***************
consensus_6851#0 CTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAAC 510
consensus_6851#1 CTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAAC 540
********* **************************************************
consensus_6851#0 GTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTG 570
consensus_6851#1 GTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTG 600
************************************************************
consensus_6851#0 AAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCATGGCGGAG 630
consensus_6851#1 A----------------------------------------------------------- 601
*
consensus_6851#0 ATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAG 690
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAG 750
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 TACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCC 810
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 ATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTG 870
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAG 930
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 CGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGT 990
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 GATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGC 1050
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 GAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTC 1110
consensus_6851#1 ------------------------------------------------------------
consensus_6851#0 GTGCGACCGCAGACGG 1126
consensus_6851#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||