These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1126 fasta sequence [CCGGCAACCCTTAGCGCAGCACTGGGCTAGAAAACGACACGAAAAGGTACACAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC-GTAGAAAGATTGCTTTCAATCCAAAACTACCCGTA--AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAG-AAG-GAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA-TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCCATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTGCGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAGCGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGTGATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGCGAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTCGTGCGACCGCAGACGG] [+] EMBL BM638441 [CCGGCAACCCTTAGCGCAGCACTGGGCTAGAAAACGACACGAAAAGGTACACAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC GTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGAGCGAGGGAGAGATAAACAGATCACGTACTAGAAATTGAACAAGAATAGCAAAGTTCAATCATATTTGCATCGTGTATACTAATCCGTTTGTACAAGTGTATTGTGTAAAGTGTATTGAACGTACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGA GAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCC CGATCATTGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCA ] [+] EMBL BM610985 [ ccgGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTAC GAAAGATTGCTTTCAATCCAAAACTACCCGTA AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGGATAGCAAAGTTCAAACAAATTTGCATCGTGTAAACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGAGGATACTCTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGTATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGG ] [+] EMBL BM635178 [ ccgGTTTAAT GGTATAG TTTATTCTGCAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTA AGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAG AAA GAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACG ] [+] EMBL BM632564 [ ccG GAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGAAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCCATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTGCGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAGCGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGTGATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGCGAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTCGTGCGACCGCAGACGG] [+] EMBL BM652520 [ ccgCTCCGATGCGCAGGTGAATGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCA TGGCGGAGATTGCCGACCTCACTTACAACGTGGTGGCCTTCTCCGAAATCATGCACATGATCTGGAAGCGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAGTACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGGGCAAGGAAAATATCTACGCCATCCTAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGGACGTGCGCGAAAAGGCGAAA ] consensusID : consensus_6851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATGTGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGA] [+] EMBL BM613576 [CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCGGCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATGTGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATCCAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACAAGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTATTGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGTTTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCCACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACTCTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAACGTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6851#0 ----------------------CCGGCA-ACCCTTAGCG-CAGCACTGGGCTAGAAAACG 36 consensus_6851#1 CCGGTGGACTGCTGTCGCTGAGCAAATGCACCATTAGTAACGTTACGCAGCGTTAAATCG 60 * *** **** * ** ** *** ** consensus_6851#0 ACACGAA---AAGGTACA-CAGAGTGGACTGCTGTCGCTGAGCAAATGCACCAATAGTAA 92 consensus_6851#1 GCACGGATTTATCGTACGGTATTGTAACAGGCTGGTGAAGCTGTAGAGTAGAGGCAGATG 120 **** * * **** * ** **** * * * * * ** consensus_6851#0 CGTTACGCAGCGTTAAATCG-GCACGGATTTATCGT-ACGTAGAAAGATTGCTTTCAATC 150 consensus_6851#1 TGTTAAAAAGTGTATTTGCGTACGCGAATGGCCTGTGAAGTAGAAAGATTGCTTTCAATC 180 **** ** ** ** * ** ** ** * ********************* consensus_6851#0 CAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACA 210 consensus_6851#1 CAAAACTACCCGTAAGAGAGCGAGGGAGAGATAAAGAGATCACGTAATAGAAATTGAACA 240 ************************************************************ consensus_6851#0 AGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTAT 270 consensus_6851#1 AGAATAGCAAAGTTCAAACAAATTTGCATCGTGTATACTAATCCGTTTGTATAAGTGTAT 300 ************************************************************ consensus_6851#0 TGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGT 330 consensus_6851#1 TGTGTAAAGTGTATTGAACGAACGTGCAAAGTGCTCGTGTTTGTGTGTGAGTGTGCGTGT 360 ************************************************************ consensus_6851#0 TTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCC 390 consensus_6851#1 TTTATTTTAATTTATTACGACACCAGATTTCATCTGGTACCGAGGACACACTTTGTACCC 420 ************************************************************ consensus_6851#0 ACTTCGGAACAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAGGAGAGAGAGGATACT 450 consensus_6851#1 ACTTCGGAGCAGGAGGGCTAAGTAAACCCACAACAAAGAGAGAAAGAGAGAGAGGATACT 480 ******** *********************************** *************** consensus_6851#0 CTAGGAAAGGCCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAAC 510 consensus_6851#1 CTAGGAAAGACCAGAGCCAGACAACACGTCAAAATGAGGAAAACCGACACACAAATGAAC 540 ********* ************************************************** consensus_6851#0 GTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTG 570 consensus_6851#1 GTAGCTGGCATACGTCGCAACATCAAGAACCTCGCCCACAACTACTCCGATGCGCAGGTG 600 ************************************************************ consensus_6851#0 AAGGTGCGGGAAGCCACCTCGAACGACCCATGGGGCCCTTCGTCCACGATCATGGCGGAG 630 consensus_6851#1 A----------------------------------------------------------- 601 * consensus_6851#0 ATTGCCGACCTCACGTACAACGTGGTGGCCTTCTCCGAAATCATGCAGATGATCTGGAAG 690 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CGCATGAACGACCATGGCAAAAACTGGCGGCACGTGTACAAGGCACTGCTACTGCTGGAG 750 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 TACCTCATCAAAACGGGTACGGAGAAGGTGGCGCAACAGTGCAAGGAAAATATCTACGCC 810 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 ATCCAAACACTGAAGGAATTCCAGTACATGGAGGAGGGCAAGGATCAGGGCATGCACGTG 870 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CGCGAAAAGGCGAAACAGCTCGTATCGCTGCTAAAGGATGACGAGCGGCTGAAGAACGAG 930 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CGGGCCCGCGCCCTGAAGGCGAAGGAACGTTTCGCCCGAACGGCCAGCGGGTTCGGTAGT 990 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 GATGGTTCGATCGATGGCCCAACGCAGCGTGACCCAAGGCCACCGAACTGGGGCGAAGGC 1050 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 GAACCGATTGCGGGGGCAGCAACGAGCGGTGTCGGCAAGCCGGTGTCTGAGATTGAGTTC 1110 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 GTGCGACCGCAGACGG 1126 consensus_6851#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||