These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1061 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCAGGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAAATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTCCCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACTCGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT--ACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTGTGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG] [+] EMBL BM581690 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCAGGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAAATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTCCCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACTCGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGC ] [+] EMBL BM602672 [ ccgGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGTAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT ACACCTACTACAAAGCGCGCGCAGGTCACATGC ] [+] EMBL BM614183 [ ccgGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT ACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTG ] [+] EMBL BX603566 [ CGACGAGAGCGAGAGCGAGAGACAGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTTACACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAGAGGAGAGGAAGGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTGTGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG] consensusID : consensus_6852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCGGACGCGTGGGCCAGCCGTATTTTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTGCGTGTGTGCGTGTGCAGTGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGACCGTCGACGTCAGCGCTCAGCCCTCTCCCCCCGCACCCTGCTACTACGGCGAACCATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAACGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCCACCAACACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGATTGGAATATTTTTTCGAATCGGATCCCTTCTGCGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAACCCACGTGCCCCGTGAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCACTGAATAAGTCGAGTGAAAGTCTCTGAACACAGATATAGAAAAGAAAAGGCAGTAATCAGCAGCAGCAGCACACAAGATGAATCCCGGCGCACCGAACTACCAGATGGCCTCGCTGTACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGGCCGGCCCGGTCCTGTC] [+] EMBL BM617098 [CCGCGGACGCGTGGGCCAGCCGTATTTTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTGCGTGTGTGCGTGTGCAGTGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGACCGTCGACGTCAGCGCTCAGCCCTCTCCCCCCGCACCCTGCTACTACGGCGAACCATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAACGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCCACCAACACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGATTGGAATATTTTTTCGAATCGGATCCCTTCTGCGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAACCCACGTGCCCCGTGAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCACTGAATAAGTCGAGTGAAAGTCTCTGAACACAGATATAGAAAAGAAAAGGCAGTAATCAGCAGCAGCAGCACACAAGATGAATCCCGGCGCACCGAACTACCAGATGGCCTCGCTGTACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGGCCGGCCCGGTCCTGTC] consensusID : consensus_6852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGACGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCCTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATCATTTAAAGAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGAATACAACACAGAGGGAAAAGGAAAATGGAGTAAGCGAGGATAATTTGTGAGCGCGCGCGCAGTACCGGTGCGCACCGGGCGAGCCGAGTGGAAAGGAATTGCAGGAGAAAA] [+] EMBL BM598742 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGACGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCCTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATCATTTAAAGAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGAATACAACACAGAGGGAAAAGGAAAATGGAGTAAGCGAGGATAATTTGTGAGCGCGCGCGCAGTACCGGTGCGCACCGGGCGAGCCGAGTGGAAAGGAATTGCAGGAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6852#1 ------------------------------------------------------------ consensus_6852#2 ------------------------------------------------------------ consensus_6852#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCA 60 consensus_6852#1 ------------------------------------------------------------ consensus_6852#2 ------------------------------------------------------------ consensus_6852#0 GGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAA 120 consensus_6852#1 ------------------------------------------------------------ consensus_6852#2 ------------------------------------------------------------ consensus_6852#0 ATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTC 180 consensus_6852#1 ------------------------------------------------------------ consensus_6852#2 ------------------------------------------------------------ consensus_6852#0 CCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACT 240 consensus_6852#1 ----------------------------------CCGCGGACGCGTGGGCCAGCCGTATT 26 consensus_6852#2 ------------------------------------------------------------ consensus_6852#0 CGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACC 300 consensus_6852#1 TTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTG--CGTGTGTGCG 84 consensus_6852#2 -----------------------------------CCGCCCACGCGTC--CGCCCACGCG 23 consensus_6852#0 ACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAA 360 * * ** consensus_6852#1 TGTGCA-G-TGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGA 142 consensus_6852#2 TCCGCA-AACACACACACACACAGACAAAC-TATACACGCAACGTGTACCGATTCCTTAA 81 consensus_6852#0 TGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGC 420 * *** * * * * * * consensus_6852#1 CCGTCGACGTCAGCGCTCAGC-----CCTCTCCCCCCGC-ACCCTGCTACTACGGCGAAC 196 consensus_6852#2 CTGACGACGT-AGCTCTTTTC-----CTCCTGTTCGTTT-GTTTTTGAAACAAGA-AAAC 133 consensus_6852#0 CTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAA 480 * ** ** * * * * * * * consensus_6852#1 CATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAA 256 consensus_6852#2 AAATCATTGATCTTAAGCTT----AAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTT 189 consensus_6852#0 AAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAG--CATCCGCTGCCGCCGCCGC 538 * * ** * * ** * consensus_6852#1 CGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCC---------ACCAA 307 consensus_6852#2 TCCT---TCCTTCTCTTTTGTCTAAAACAAAAGCAAAA-------------------CAA 227 consensus_6852#0 TGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAA 598 * * ** * * * ** consensus_6852#1 CACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGAT--TGGAATATTTTTTCGA-ATC 364 consensus_6852#2 CAC--ACACACACAGTGGTGTTCCCGGTTTTGTCTCCT--TGTATAAATTATTCGA-G-- 280 consensus_6852#0 CACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGT 658 *** * **** ** * ** *** consensus_6852#1 GGATCCCTTCTG--CGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAAC 422 consensus_6852#2 -----CGCCGTG--CGTTAAATACAAAAAA------CAGTAA--AGGAAAAAAAAACAAC 325 consensus_6852#0 AGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGC 718 * * * * * * * * * consensus_6852#1 CCACGTGCC-CCGT-GAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCA---CTGAAT 477 consensus_6852#2 TAATA-GCA-GCGC-CGCAGCAAACGAAAACAAAAGTTTAT--------CA---TTTAAA 371 consensus_6852#0 GCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCAC 778 ** * * * * * * * consensus_6852#1 AAGTCGAGTGAAAGTCTCTGAACACAGATA---TAGAAAAGAAAAGGCAGTAATCAGCAG 534 consensus_6852#2 GAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGA 431 consensus_6852#0 GGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAA-GCAAGCCGCCCCAACCTTTAC 837 * ** * * * * * ** consensus_6852#1 CAGCAGCACACAAGATG---AATCCCGGCGCACC-GAACTACCAGATGGCCTCG--CTGT 588 consensus_6852#2 ATACAACACAGAGGGAA---AAGGAAAATGGAGT-AAGCGA--GGATAATTT------GT 479 consensus_6852#0 ACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCAT 897 * *** * * * * * * * * * * * consensus_6852#1 ACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGG 648 consensus_6852#2 GAGCGCGCGCGCAGTACCGGTGCGC-ACCG-GGCGA-GCCGAGTGGAAAGGAATTGCAGG 536 consensus_6852#0 CCTCTCACCACCAGCAC-GGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGA 956 * * * ** * * * * * * * * * consensus_6852#1 CCGGCCCGGTCCTGTC-------------------------------------------- 664 consensus_6852#2 AGAAAA------------------------------------------------------ 542 consensus_6852#0 CTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTG 1016 consensus_6852#1 --------------------------------------------- consensus_6852#2 --------------------------------------------- consensus_6852#0 TGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG 1061 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||