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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1061 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCAGGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAAATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTCCCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACTCGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT--ACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTGTGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG]
[+] EMBL BM581690 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCAGGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAAATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTCCCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACTCGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGC ]
[+] EMBL BM602672 [ ccgGGAGAGATAGAGAAAGCGCATTACAAATCAACCACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAATGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGTAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT ACACCTACTACAAAGCGCGCGCAGGTCACATGC ]
[+] EMBL BM614183 [ ccgGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGCCTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAAAAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAGCATCCGCTGCCGCCGCCGCTGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAACACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGTAGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGCGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTT ACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTG ]
[+] EMBL BX603566 [ CGACGAGAGCGAGAGCGAGAGACAGCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCACGGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAAGCAAGCCGCCCCAACCTTTACACACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCATCCTCTCACCACCAGCACGGTGTGTGAGAGGAGAGGAAGGGGAGGCGGCGCATGCACCGACTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTGTGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG]
consensusID : consensus_6852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCGGACGCGTGGGCCAGCCGTATTTTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTGCGTGTGTGCGTGTGCAGTGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGACCGTCGACGTCAGCGCTCAGCCCTCTCCCCCCGCACCCTGCTACTACGGCGAACCATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAACGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCCACCAACACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGATTGGAATATTTTTTCGAATCGGATCCCTTCTGCGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAACCCACGTGCCCCGTGAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCACTGAATAAGTCGAGTGAAAGTCTCTGAACACAGATATAGAAAAGAAAAGGCAGTAATCAGCAGCAGCAGCACACAAGATGAATCCCGGCGCACCGAACTACCAGATGGCCTCGCTGTACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGGCCGGCCCGGTCCTGTC]
[+] EMBL BM617098 [CCGCGGACGCGTGGGCCAGCCGTATTTTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTGCGTGTGTGCGTGTGCAGTGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGACCGTCGACGTCAGCGCTCAGCCCTCTCCCCCCGCACCCTGCTACTACGGCGAACCATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAACGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCCACCAACACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGATTGGAATATTTTTTCGAATCGGATCCCTTCTGCGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAACCCACGTGCCCCGTGAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCACTGAATAAGTCGAGTGAAAGTCTCTGAACACAGATATAGAAAAGAAAAGGCAGTAATCAGCAGCAGCAGCACACAAGATGAATCCCGGCGCACCGAACTACCAGATGGCCTCGCTGTACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGGCCGGCCCGGTCCTGTC]
consensusID : consensus_6852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAAACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGACGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCCTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATCATTTAAAGAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGAATACAACACAGAGGGAAAAGGAAAATGGAGTAAGCGAGGATAATTTGTGAGCGCGCGCGCAGTACCGGTGCGCACCGGGCGAGCCGAGTGGAAAGGAATTGCAGGAGAAAA]
[+] EMBL BM598742 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGACGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCCTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATCATTTAAAGAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGAATACAACACAGAGGGAAAAGGAAAATGGAGTAAGCGAGGATAATTTGTGAGCGCGCGCGCAGTACCGGTGCGCACCGGGCGAGCCGAGTGGAAAGGAATTGCAGGAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6852#1 ------------------------------------------------------------
consensus_6852#2 ------------------------------------------------------------
consensus_6852#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAGGAGGAGGCCCGTAGCTACTGAACAGGCA 60
consensus_6852#1 ------------------------------------------------------------
consensus_6852#2 ------------------------------------------------------------
consensus_6852#0 GGCGGCGCAAACAGAAACCGACAAAGAGATAGAGAGCGATAGAGCGAGAGAGCGTTAGAA 120
consensus_6852#1 ------------------------------------------------------------
consensus_6852#2 ------------------------------------------------------------
consensus_6852#0 ATAACACAAATAATACTACTATCGGTGGGTGGTAGGCGAAAAACACCTCCCGCGCAGCTC 180
consensus_6852#1 ------------------------------------------------------------
consensus_6852#2 ------------------------------------------------------------
consensus_6852#0 CCAACACCCACCACCACCACCACAGAACTTTCCATCCTTCGTGTAGTAGTCAAGCACACT 240
consensus_6852#1 ----------------------------------CCGCGGACGCGTGGGCCAGCCGTATT 26
consensus_6852#2 ------------------------------------------------------------
consensus_6852#0 CGCGCGAAGCACAGTGTGGTAAGTGGAGGAGAGATAGAGAAAGCGCATTACAAATCAACC 300
consensus_6852#1 TTTTCATTTCGCAAAAAAAAAGAAGAGATTGCCAACAGTGCGAGTGTG--CGTGTGTGCG 84
consensus_6852#2 -----------------------------------CCGCCCACGCGTC--CGCCCACGCG 23
consensus_6852#0 ACTACTCACTCACAAATCAATACAGAGAAGTCAGATCGAAAATATCTCGTCGTTGCAAAA 360
* * **
consensus_6852#1 TGTGCA-G-TGCGAACAAACGAAGTCGTGCGTGAGAAATTGAAAGAAAGAAAAAAATCGA 142
consensus_6852#2 TCCGCA-AACACACACACACACAGACAAAC-TATACACGCAACGTGTACCGATTCCTTAA 81
consensus_6852#0 TGTGCATGATGAAGTTATGCGTACGCGCCGCCATACACTCAGAAGACGACGACACGCCGC 420
* *** * * * * * *
consensus_6852#1 CCGTCGACGTCAGCGCTCAGC-----CCTCTCCCCCCGC-ACCCTGCTACTACGGCGAAC 196
consensus_6852#2 CTGACGACGT-AGCTCTTTTC-----CTCCTGTTCGTTT-GTTTTTGAAACAAGA-AAAC 133
consensus_6852#0 CTCTGGATGTGTCCTCCTTCCGGACCCGCTCGCCCACGCCGTCCCAGCGCCACACGGGAA 480
* ** ** * * * * * * *
consensus_6852#1 CATTCTCAGCGTCTCGGCATTTGGAAGCAAGAAGCAAAAGAAGTTCCGTGTGGTTGACAA 256
consensus_6852#2 AAATCATTGATCTTAAGCTT----AAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTT 189
consensus_6852#0 AAAGGATCCGTATCCGAGCTGCTGAAATTTCGCAACGAG--CATCCGCTGCCGCCGCCGC 538
* * ** * * ** *
consensus_6852#1 CGCGCGGTGCATCAAAAAAGCGAAACGTAGCAGCAACAACGTGTCC---------ACCAA 307
consensus_6852#2 TCCT---TCCTTCTCTTTTGTCTAAAACAAAAGCAAAA-------------------CAA 227
consensus_6852#0 TGTCGCCGCCACTACAATCGCCTAAGAGAGAAAGAGAGTTTGCCTCCTTCAAGCGGCAAA 598
* * ** * * * **
consensus_6852#1 CACCAGCAAACACAGTGTGAGTGCGCGTACTTCGTGAT--TGGAATATTTTTTCGA-ATC 364
consensus_6852#2 CAC--ACACACACAGTGGTGTTCCCGGTTTTGTCTCCT--TGTATAAATTATTCGA-G-- 280
consensus_6852#0 CACACGCGCGCACACCTGCAGCAATGGTGGCAGGCGGTGGTGTGTAGTACAGCCGACAGT 658
*** * **** ** * ** ***
consensus_6852#1 GGATCCCTTCTG--CGTGGATTTCCGGTGGTGTGTTCGGTGGTCATCGAACGAGAGCAAC 422
consensus_6852#2 -----CGCCGTG--CGTTAAATACAAAAAA------CAGTAA--AGGAAAAAAAAACAAC 325
consensus_6852#0 AGCAGCAGCATAGCCAACGAGAATATAAGTAGCCGACGACGAGAGCGAGAGAAAGAGAGC 718
* * * * * * * * *
consensus_6852#1 CCACGTGCC-CCGT-GAACGTGTGTGTGTGTGTGTGTTTGTGTGCGCACCA---CTGAAT 477
consensus_6852#2 TAATA-GCA-GCGC-CGCAGCAAACGAAAACAAAAGTTTAT--------CA---TTTAAA 371
consensus_6852#0 GCGCGCGCGTGCATTCAACATGTGCGAGACAGAGAGGTCAGATCATCTTAAGATTTTCAC 778
** * * * * * * *
consensus_6852#1 AAGTCGAGTGAAAGTCTCTGAACACAGATA---TAGAAAAGAAAAGGCAGTAATCAGCAG 534
consensus_6852#2 GAGACAAACAAACACACAGACACACAAGCAAGTTAAGATAAGAGCGGAGATAACATGTGA 431
consensus_6852#0 GGTTCGTAGCAATTTTGTGTCGTCTAAGCGCAATCCAA-GCAAGCCGCCCCAACCTTTAC 837
* ** * * * * * **
consensus_6852#1 CAGCAGCACACAAGATG---AATCCCGGCGCACC-GAACTACCAGATGGCCTCG--CTGT 588
consensus_6852#2 ATACAACACAGAGGGAA---AAGGAAAATGGAGT-AAGCGA--GGATAATTT------GT 479
consensus_6852#0 ACCTACTACAAAGCGCGCGCAGGTCACATGCACCCAACCGAGAAGGTCACTTCGGCTCAT 897
* *** * * * * * * * * * * *
consensus_6852#1 ACGTGGGCGACCTGCACTCGGACATTACCGAGGCGACGCTGTTCGAGAAGTTCTCGTCGG 648
consensus_6852#2 GAGCGCGCGCGCAGTACCGGTGCGC-ACCG-GGCGA-GCCGAGTGGAAAGGAATTGCAGG 536
consensus_6852#0 CCTCTCACCACCAGCAC-GGTGTGTGAAAGGAGAGGGAAGGGAGGCGGCGCATGCACCGA 956
* * * ** * * * * * * * * *
consensus_6852#1 CCGGCCCGGTCCTGTC-------------------------------------------- 664
consensus_6852#2 AGAAAA------------------------------------------------------ 542
consensus_6852#0 CTCCACTACTGTGTGTGTGTGTGTGTGTTCTACCAAACATACAGACATAGACACGCGGTG 1016
consensus_6852#1 ---------------------------------------------
consensus_6852#2 ---------------------------------------------
consensus_6852#0 TGTGTGTGTCTCGTCAAGGTGCGTGAGGGCGGAAAGAAGAGGGGG 1061
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||