These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2293 fasta sequence [CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACG-CCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCAC-GCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCA-CCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTAC-GAAAGCAGTCTATCGCCCCCGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAG-GAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA-GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC-CAAGTTGAGCCATTCCGCCGCCAAAAAAAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACTCGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAGCTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCCCATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCGTCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACGGGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCAGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGACGATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGCGCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGCAGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATCATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTTACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGAAGGAGATGACGAAGAAAGCGATGGCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCTCGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACGCGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCACGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCCTGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGACGGAGCACAAGTT] [+] EMBL CNS08XZP [CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACG CCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCAC GCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCA CCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTAC GAAAGCAGTCTATCGCCCCCGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAG GAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC CAAGT ] [-] EMBL CNS08XZQ [ ACGTGTGTGAGCAGTGCGG GCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGG GGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTGTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGGCGCCCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCACGGCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGG TGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCAGCCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTACGGCAAGCAGTCTATCGATCACGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAGCGAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGGAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATCTCAAGTTGAGCCATTCCGCCGCCAAAAAAAAAC ] [+] EMBL BM636539 [ cCGCCCACGCGT CCG GCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC CAAGTTGAGCCATTCCGCCGCCAAACACAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACTCGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAGCTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCCCATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCGTCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACGGGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCAGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGACGATGGCTT ] [+] EMBL BM602115 [ cCGGTTGGCGATGCACCGGTGGTGACGGGCTCATCCATTTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGTCGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTGCCGGTAGCCTCGCGCAAGGAAGACGATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGCGCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGCAGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATCATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTTACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGA ] [+] EMBL BM646050 [ cCGGTGAGCCGGAGCTGAGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGGCAGCGCGTCTTCCCGAAGGATATTTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCGGCAGTGGCCATTCACTTATAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGC GTAGTGTAGACGGT GGCGAAGGAGATGACGAAGAAAGCGATGGCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCTCGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACGCGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCACGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCCTGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGACGGAGCACAAGTT] consensusID : consensus_6854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 142 fasta sequence [CCGCGGACGCGTGGGCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGGGTAGTTTGAGTTTTTCGTACTCCAAGTTACTCCAAAAA] [+] EMBL BM614952 [CCGCGGACGCGTGGGCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGGGTAGTTTGAGTTTTTCGTACTCCAAGTTACTCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6854#0 CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGT 60 consensus_6854#1 --CCGCGGACGCGTGG--GCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGG-GCCGTGT 55 * * ** ********************************* ******* consensus_6854#0 TGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAG 120 consensus_6854#1 TGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGG-GTAGTTTGAG 114 **************************************** ******** * ******** consensus_6854#0 TTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTA 180 consensus_6854#1 TTTTTCGTACTCCAAGTTACTCCAAAAA-------------------------------- 142 **************** *********** consensus_6854#0 AACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGA 240 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 TGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACG 300 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACGCCGCACCGTATCGGCAGCGGA 360 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCAC 420 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCG 480 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CAACGAGTCCGGCACGCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGC 540 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGC 600 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 ACCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGC 660 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 ACGATAGCGTGTTCTCTGAATCGGCCGGTACGAAAGCAGTCTATCGCCCCCGCTAAAGAA 720 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGAGTTAGCAGACGTACTGCGTAAGGAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAA 780 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAG 840 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 AGCGAAGGTTCGCTCAGCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCC 900 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATC 960 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 AGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATCCAAGTTGAGCCATTCC 1020 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GCCGCCAAAAAAAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACT 1080 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAG 1140 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCC 1200 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCG 1260 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 TCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACG 1320 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCA 1380 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGAC 1440 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGC 1500 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGC 1560 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 AGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATC 1620 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 ATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAG 1680 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 ATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAG 1740 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTAC 1800 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 TCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTT 1860 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 ACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACG 1920 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGAAGGAGATGACGAAGAAAGCGATG 1980 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 GCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCT 2040 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACG 2100 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCA 2160 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCC 2220 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 TGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGA 2280 consensus_6854#1 ------------------------------------------------------------ consensus_6854#0 CGGAGCACAAGTT 2293 consensus_6854#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||