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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[CCGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTAAAACTCTCACTATCGTCA-GGATGTTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGATATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTTGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA]
[+] EMBL BM595799 [CCGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTAAAACTCTCACTATCGTCAGGGATGTTGACGTGTGGATAGCG ]
[+] EMBL BX608815 [ ACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATTATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTTAAACTCTCACTATCGTCA GGATGTTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGATATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTTGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAG ]
[+] EMBL BX626041 [ tTTCGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGNTTTTTAAAACTCTCACTATCGTNA GGATGNTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGANATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTNGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA]
consensusID : consensus_6859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence
[GGGCGGACGGGGAGGGAATGGCCTCGAAGGCAGAACCGGCACNTAGGCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGTACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTAAAAACTCTCACGTATCGTCCAGGGATGTTGACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTTATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCAGTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTACCATTAAACCACTTGAATCNTNNTNACCCCTTTGGGAA]
[+] EMBL BX467526 [GGGCGGACGGGGAGGGAATGGCCTCGAAGGCAGAACCGGCACNTAGGCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGTACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTAAAAACTCTCACGTATCGTCCAGGGATGTTGACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTTATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCAGTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTACCATTAAACCACTTGAATCNTNNTNACCCCTTTGGGAA]
consensusID : consensus_6859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTTCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCACTATCGTCAGGATGTTG]
[+] EMBL BM647604 [CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTTCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCACTATCGTCAGGATGTTG]
consensusID : consensus_6859#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[CAGATCCCCCGAGGTAAAAACATTTCGGAGGCATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGATCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCACTATCGTCAGGATGTTGACGTGTGGATAGCGTAGTGATTACAGGTTTACCATTTATCCTTCAGATATTTTTCAACCAAATGGTATGTGTCAAATATCAGTTAGATTTCAGTAACACAAACTACAAGTCCTCTTTGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAAACTTGAAT]
[+] EMBL AL695273 [CAGATCCCCCGAGGTAAAAACATTTCGGAGGCATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGATCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCACTATCGTCAGGATGTTGACGTGTGGATAGCGTAGTGATTACAGGTTTACCATTTATCCTTCAGATATTTTTCAACCAAATGGTATGTGTCAAATATCAGTTAGATTTCAGTAACACAAACTACAAGTCCTCTTTGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAAACTTGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6859#1 ----------------------------------------------GGGCGGACGGGGAG 14
consensus_6859#3 ------------------------------------------------------------
consensus_6859#0 ------------------------------------------------------------
consensus_6859#2 CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCG 60
consensus_6859#1 GGAATGGCCTCGAAGGCAGAACCGGCA-CNTAGGCGGCAACATGGAACCGACCGTCCGAG 73
consensus_6859#3 ------------------------------------------------------------
consensus_6859#0 -----------------------CCGG-TAACTTCGGCAACATGGAACCGACCGTCCGAG 36
consensus_6859#2 GCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAG 120
consensus_6859#1 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCA-ACCGCAGCAG 132
consensus_6859#3 ------------------------------------------------------------
consensus_6859#0 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAG 96
consensus_6859#2 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCA-ACCGCAGCAG 179
consensus_6859#1 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 192
consensus_6859#3 ------------------------------------CAGATCCCCCGAGGTAAAAACA-T 23
consensus_6859#0 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 156
consensus_6859#2 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 239
** * * ** ***** *
consensus_6859#1 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 252
consensus_6859#3 TTCGGAGGCA-TCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 82
consensus_6859#0 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 216
consensus_6859#2 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 299
********** *************************************************
consensus_6859#1 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 312
consensus_6859#3 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 142
consensus_6859#0 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 276
consensus_6859#2 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGAC---------- 349
**************************************************
consensus_6859#1 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGT 372
consensus_6859#3 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 201
consensus_6859#0 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 335
consensus_6859#2 ---GTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 405
******************************************************* *
consensus_6859#1 ACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 432
consensus_6859#3 ACGA-TCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 260
consensus_6859#0 ACGA-TCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 394
consensus_6859#2 ACGA-TCTTACT---TCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAA 461
**** ******* **************** * ******* ******************
consensus_6859#1 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 492
consensus_6859#3 ACTTGTTTACGA-TCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 319
consensus_6859#0 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 454
consensus_6859#2 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 521
************ ***********************************************
consensus_6859#1 TTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 552
consensus_6859#3 TTTCAA-TATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 378
consensus_6859#0 TTTCAA-TATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 513
consensus_6859#2 TTTCAA-TATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 580
****** ********* * *****************************************
consensus_6859#1 CTTGACTTTATCCATCATTGTGAGTT--TTAAAAACTCTCACGTATCGTCCAGGGATGTT 610
consensus_6859#3 CTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCAC-TATCGTC--AGGATGTT 435
consensus_6859#0 CTTGACTTTATCCATCATTGTGAGTTT-TTTAAAACTCTCAC-TATCGTC--AGGATGTT 569
consensus_6859#2 CTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCAC-TATCGTC--AGGATGTT 637
******* ****************** ** ********** ******* *******
consensus_6859#1 GACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTT 670
consensus_6859#3 GACGTGTGGATAGCGT--AGTG-ATTACAGGTTTACCATT-TATCCTT-CAG-ATATTTT 489
consensus_6859#0 GACGTGTGGATAGCGTT-TGTG-ATTACAGGTTTACCATT-TTTCCTT-CAG-ATATTTT 624
consensus_6859#2 G----------------------------------------------------------- 638
*
consensus_6859#1 ATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCA 730
consensus_6859#3 -TCAACCAAATGGTATGTGTCAA-ATATCAGTTAGATTTCAG--TAACACAAACTACA-A 544
consensus_6859#0 --TCACCAAATG-TATGTGTCAA--TATCAGTTTGATTTTAG--TA--AAAAACTACA-A 674
consensus_6859#2 ------------------------------------------------------------
consensus_6859#1 GTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTA-CCATTAAACCACTTGAATCN 789
consensus_6859#3 GT-CCTCTT-TGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAA-ACTTGAAT-- 599
consensus_6859#0 GT-CCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGAT---CTTGATCTC 730
consensus_6859#2 ------------------------------------------------------------
consensus_6859#1 TNNTNACCCCTTTGGGAA------------------------------------------ 807
consensus_6859#3 ------------------------------------------------------------
consensus_6859#0 TTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTT 790
consensus_6859#2 ------------------------------------------------------------
consensus_6859#1 ------------------------------------------------------------
consensus_6859#3 ------------------------------------------------------------
consensus_6859#0 TCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTAT 850
consensus_6859#2 ------------------------------------------------------------
consensus_6859#1 -------------------------------------------------------
consensus_6859#3 -------------------------------------------------------
consensus_6859#0 CCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA 905
consensus_6859#2 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||