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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1195 fasta sequence
[CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGCTGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGCGCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGCACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGTCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA-TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA-CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAAA]
[+] EMBL BM629566 [CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGCTGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGCGCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGCACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGTCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAAAAATAGAAGCACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGATTTTTGTTTTG ]
[+] EMBL BX617600 [ TCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCAGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCAT ]
[+] EMBL BX627921 [ GCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTA ]
[+] EMBL AGA285817 [ CCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGT ]
[-] EMBL AGA284512 [ AGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGGGGAGCATGACCATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAAA]
consensusID : consensus_6861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence
[AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGAGCCAAAATCGCGGGCACAGACGTGACGGCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTGTTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGCAGTAACACTGCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGGAGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCGAAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGGAAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTACGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATGTTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGATTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTACACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC]
[+] EMBL AL696489 [AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGAGCCAAAATCGCGGGCACAGACGTGACGGCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTGTTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGCAGTAACACTGCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGGAGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCGAAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGGAAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTACGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATGTTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGATTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTACACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6861#0 CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGC 60
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 TGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGC 120
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 GCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGC 180
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 ACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGT 240
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 CAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACG 300
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 AGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGC 360
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 AGTCGATCAGTTACTCGAAG-GAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGC 419
consensus_6861#1 AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGC 60
* ** ** * **** *************************** ***********
consensus_6861#0 CAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATC 479
consensus_6861#1 CAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGA-GCCAAAATC 119
************************************************* *********
consensus_6861#0 GCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACG 539
consensus_6861#1 GCGGGCACAGACGTGACGGC-GATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACG 178
******************** ***************************************
consensus_6861#0 GTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGT 599
consensus_6861#1 GTGTTGCTTAACTGGATATTGGGGAAGAAATA-AAGGACACACTTGCGCGCGCCCATAGT 237
******************************** ***************************
consensus_6861#0 CTAGTTCGATAAGGTATCATTGT-TTTGTT-GATTTT-GTTTTGTTTTGTTTTGT-TTTG 655
consensus_6861#1 CTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTG 297
****************** * * ****** ****** ** * * * *** ****
consensus_6861#0 TTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGG-ATGTGTTCCAGCAGATTCGC 714
consensus_6861#1 TTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGC 357
******************** ****************** ********************
consensus_6861#0 AGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACG-AGG 773
consensus_6861#1 AGTAAC-ACTGCC-GCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGG 415
****** ****** ****************************** **** ****** ***
consensus_6861#0 AGCATGACATGCTCCGCACGT--AACG--AATCATTA--TGTATCTAC-AATAGTTTCCG 826
consensus_6861#1 AGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCG 475
********************* **** ******* ********* ***********
consensus_6861#0 AA--CAGGATTTCCACAAAAAAAACAACG-CTCGGT-TATTGTT--ATAATGC-GTAGGG 879
consensus_6861#1 AAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGG 535
** *********************** * ***** ******* ******* *** **
consensus_6861#0 A--GTTTTCCCTGGATTTGGGG-CTGTTATTTC---GCAAAA-TTTTGAATCATT-CCTA 931
consensus_6861#1 AAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTA 595
* ************ ****** ****** ** ****** ************ ****
consensus_6861#0 CGGT-----GAGAAGTAACCGTTAAA----CCGTGGGA---CTGATT------CAAAATG 973
consensus_6861#1 CGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATG 655
*** ** ******** ** ******* *** * * ****
consensus_6861#0 T--GTGGG-AAACAG-CTTAAAAG--CCCTGCGGG-AAACCGTGCAACGACGCTT---GG 1023
consensus_6861#1 TTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGA 715
* *** * ****** ******* ** ****** ***************** *
consensus_6861#0 TTGCGTTTCT-GTTCCGG-TAGTTATTACGCATTT----GGGTTAGAGAACGGTGAAGTA 1077
consensus_6861#1 TTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTA 775
****** *** ** **** *** * ********* * ** **** **********
consensus_6861#0 AA-TGTTTGTATGA-TACAGG-TATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATG 1134
consensus_6861#1 CACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC-------------- 821
* **** ****** ****** ******** * * **
consensus_6861#0 TATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAA 1194
consensus_6861#1 ------------------------------------------------------------
consensus_6861#0 A 1195
consensus_6861#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||