These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 786 fasta sequence [GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG-TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC-ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG-AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT] [+] EMBL BX618573 [GACACATGCACACATTCTGATACTATAATACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATG TTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATC ATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAG AAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG ] [+] EMBL BX612240 [ TTGGGTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAAGGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGGAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAG ] [+] EMBL BX612290 [ GAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAAAGAAATAATAAAGACAAAAGGCAAACAACAAAACAAATACTATGTACTCATACATACATACACATAAAGCAGCCGTACTACAGGCTGGACCCAACTAACCCGATTGGAGAAAAGAAATACTTAAGACCACTACAGATGAGCGATAAAAAGATGGGCGTATCATATTTCGACTGCAAAGAAGCTACGACCCTTTTCGGCGTGATGTTTTTTTTTACATGAAAATCCAATATGAAGGCGGGTCGTTTGGGAGGATTACAACGTACATAAACAAAGAAAGACAGCTAGAGGAACGTCAGACATGGACGGGATCGAAAAACGCGACCCAGACGAAATGTATTCTGCTGCTTACCAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT] consensusID : consensus_6865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG] [+] EMBL BX469411 [ATCGCGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGCTGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCATCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAATAAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGTAAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTACGTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGCAAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAATATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACAGACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGACCGAACCTGGGAAGTNCTG] consensusID : consensus_6865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence [CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA] [+] EMBL BX612079 [CAATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA] [+] EMBL BX611829 [ ATTGATGTATTGGTAAGCAGCAGAATACATCAATTGTACGAATAATATGCACCACTGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCTGAAGAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAACAGAGCATGAGAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATACAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATTCAATAAAAACTATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6865#0 GACACATG-CACACATTCTGATACTATAA-TACTAAAAAAAAAAGAGTTATCATTAATGC 58 consensus_6865#1 ----ATCG-CGCACGAGGTTGTACTATAAGTACTAAAAAAAAAAGAGTTATCATTAATGC 55 consensus_6865#2 --CAATTGATGTATTGGTAAGCAGCAGAA-TACATCAATTGTACGAATAATATGCACCAC 57 * * * * ** *** ** * ** * ** * * consensus_6865#0 TGAGATCACATTGGTTGATATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 118 consensus_6865#1 TGAGATCACATTGGTTGAGATCTCTAGTAGCAAGAAGAAAACCCTATACTTTTAGCTTCA 115 consensus_6865#2 TGTCATCTCAATGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTG 117 ** *** ** ** * ** * **** * * * * * * consensus_6865#0 TCTAGTCAGTTAATTGAATGTTTCATCAGTTTTTGAAAGTAAACAAAAA--AGAAATAAT 176 consensus_6865#1 TCTAGTCAGTTAATTGAATGTTTCATCAGTTTNTGAAAGTAAACAAAGAGAAGAAATAAT 175 consensus_6865#2 CTTACGCGTCTGAA-GAAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGG 176 ** * * * *** * * ** *** * * * * * * * * consensus_6865#0 AAAGACAAAAGGCAA-ACAACAA-AACAAATACTATGTACTCA-TACATACATACACA-T 232 consensus_6865#1 AAAGACAAGAGGCAAGACAACAAGAACAAATACTATGTACTCAGTACATACATACACAGT 235 consensus_6865#2 ATAGGAGCATAACAGAGCA-TGAGAACGAGCAGAAGCTGAAGAATTTCCACAT---TACC 232 * ** ** ** * *** * * * * * * **** * consensus_6865#0 AAAGCAGCCGTACTACAGGCTGGACCCAAC--TAACCCGA-TTGGAGAAAAGAAA--TAC 287 consensus_6865#1 AAAGCAGCCGTACTACAGGCTGGACCCGAACGTAACCCGAATTGGAGAAAGAGAAAGTAC 295 consensus_6865#2 AAACCAATTTAACGATA--CAAAAACAGAAAACAAAACAA---AGAGACAAACAAA--AC 285 *** ** ** * * * * * * ** * * **** * ** ** consensus_6865#0 -TTAAGACCACTA--CAGATGAGCGA-TAA-AAAGA-TGGGCGTATCATATTTCGACTGC 341 consensus_6865#1 GTTAAGACCACTAGCCAGATGAGCGAATAACAAAGACTGGGCGTATCATATTTCGACTGC 355 consensus_6865#2 TATTAACCTATTATTATGATGTATGGTGAAATCAATAAAAATGAATAAAATT-------C 338 * * * * ** **** * ** * * ** * *** * consensus_6865#0 AAAG-AAGCTA-CGACCCTTT-TCGGCGTGATGTT---TTTTTTACATGAAAA--TCCAA 393 consensus_6865#1 AAAGGAAGCTAGCGACCCTTTGTCGGCGTGATCGTGAGCTGTNTACATGAAGACATCCAA 415 consensus_6865#2 AATAAAAACTATAAA--------------------------------------------- 353 ** ** *** * consensus_6865#0 TATGAAGGCGGGTCGTTTG-----GGAGGATTACA-ACGTACAT--AAACAAAG---AAA 442 consensus_6865#1 TATGAAGGCGGGTCGCTCNCTCGGGAAGGATTACAGACGTACAGTGAAGCACAGTGAACA 475 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 GACAGC-TAGAGGAAC-GTCA-GACATGG-ACGGGATCGAAAAACGCGACCCAGACGAAA 498 consensus_6865#1 GACAGCGTCGAGGAACCGTCACGACATGGCACGGGATCCGACAGAAAACGCGAGCCCAGA 535 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 TGTATTCTGCTGCTTACCAATACATCATTGTACGAATAATATGCACCACTGTCATCTCAA 558 consensus_6865#1 CCGAACCTGGGAAGTNCTG----------------------------------------- 554 consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 TGCGCAAAATAGGCACGCAGAAGAGCAGATTGCGGAAAACAATGTATTGCTTACGCGTCT 618 consensus_6865#1 ------------------------------------------------------------ consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 GAAGAAAATACGTCCGTTCTTTACGCCAGAGAGAAAGAGAGAGGGGGATAGGAGCATAAC 678 consensus_6865#1 ------------------------------------------------------------ consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 AGAGCATGATAACGAGCAGAAGCTGAAGAATTTCCACATTACCAAACCAATTTAACGATA 738 consensus_6865#1 ------------------------------------------------------------ consensus_6865#2 ------------------------------------------------------------ consensus_6865#0 CAAAAACAGAAAACAAAACAAAGAGACAAACAAAACTATTAACCTATT 786 consensus_6865#1 ------------------------------------------------ consensus_6865#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||