|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[GCAGATCCCCCGAGGTTAACACACGAAAACACTCGCAGCGTCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACTCCTTCTATCTAAACTCGGCGGTTTCGAGGTGCGATCCATCGAATCGTCCGGTTGATNTCGATTAGACGNGNCCAAAAGTTAGTGTCAGCGATGTTGCCAACGATGCGCTGCAGCACTGCGAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAGAACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCACTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACNGGAACGNGNNGCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACATAAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACAACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTACCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAAC]
[+] EMBL AL695516 [GCAGATCCCCCGAGGTTAACACACGAAAACACTCGCAGCGTCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACTCCTTCTATCTAAACTCGGCGGTTTCGAGGTGCGATCCATCGAATCGTCCGGTTGATNTCGATTAGACGNGNCCAAAAGTTAGTGTCAGCGATGTTGCCAACGATGCGCTGCAGCACTGCGAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAGAACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCACTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACNGGAACGNGNNGCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACATAAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACAACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTACCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAAC]
consensusID : consensus_6871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence
[CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCA---TTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCCCGAATCGTCCGGTTGATTTCGATTGCGGCCCAAAAGTTTGTGTCGGATGTTGCCAACGATGCGCTGCAGCACTGCAAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCACTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAGGTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGCCACTGGAGGGGGGAAGGTTGTGCAGGTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTATTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACATGAAATTCTAGG]
[+] EMBL BM590602 [CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCA TTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCCCGAATCGTCCGGTTGATTTCGATTGCGGCCCAAAAGTTTGTGTCGGATGTTGCCAACGATGCGCTGCAGCACTGCAAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCACTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAGGTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGCCACTGGAGGGGGGAAGGTTGTGCAGGTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTATTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACAT ]
[+] EMBL BX606910 [ GTCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCACGGCAAGAAGGTGTCCGAAATGGTGGAAG ]
[-] EMBL CNS08QR0 [ GAGGTTTAGG GTGTGTGTGTGTGTGTGCAAATTGCCACTGGA GGGGGAAGGTTGTGCAGGTTGGAAGGGGGCGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGCTGGTATTATTGAATCCATTCGTAGCGGGAACGTACGGCGCGCACATGAAATTCTAGG]
consensusID : consensus_6871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[TCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCTCGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCCTTTGTTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCCAAAACGCGCACGAACAGTGCCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT]
[+] EMBL CNS08QQZ [TCCGCGTCGTACCGATTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCTCGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCCTTTGTTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCCAAAACGCGCACGAACAGTGCCCGAGCTCCGGGCACGGGTCGTCCAAAAACCAGAACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT]
consensusID : consensus_6871#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC]
[+] EMBL BM595286 [CCGCGGACGCGTGGGCGGACGCGTGGGTGTGTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGGGCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACCGCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGATTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6871#0 GCAGATCCCCCGAGGTTAACACACGAAAACA-CTCGCAGCGTC-GCGTCGTACCGATTGT 58
consensus_6871#3 ----------------------CCGCGGACG-CGTGGGCGGAC-GCGT------GGGTGT 30
consensus_6871#1 ------------------CCGCACGAAAACAACTCGCATCGTCCGCGTCGTACCGATTGT 42
consensus_6871#2 -----------------------------------------TCCGCGTCGTACCGATTGT 19
* **** * ***
consensus_6871#0 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 118
consensus_6871#3 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 90
consensus_6871#1 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 102
consensus_6871#2 GTATTTCCACTTTTCTCCCATTTTTTGCTCAATTCCAATCATCTTTCGCATCCAAAATGG 79
************************************************************
consensus_6871#0 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 178
consensus_6871#3 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 150
consensus_6871#1 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 162
consensus_6871#2 GCGACAACTTTGGCATTCACCGTGGGCAGGGCAAGAAGGTGTCCGAAATGGTGGAAGACC 139
************************************************************
consensus_6871#0 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 238
consensus_6871#3 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 210
consensus_6871#1 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 222
consensus_6871#2 GCACCCAGGGACAGGTTTTGAGCGACTTCATGATGCAGCTGGAGGACTACACGCCGACGA 199
************************************************************
consensus_6871#0 TTCCCGATGCAGTCAC-TCCTTCTATCTAAACTCGGC-GGTTTCGAGG-TGC-GATCCAT 294
consensus_6871#3 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCCC- 269
consensus_6871#1 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCC-C 281
consensus_6871#2 TTCCCGATGCAGTCACCTCCTTCTATCTAAACTCGGCCGGTTTCGAGGGTGCCGATCC-T 258
**************** ******************** ********** *** *****
consensus_6871#0 CGAAT------CGTCCGGTTG---ATNTCGATTAGACGNGNC------CAAAAGTTAGTG 339
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 CGAAT------CGTCCGGTTG---ATTTCGATTGCGGCC---------CAAAAGTTTGTG 323
consensus_6871#2 CGAATGTAGGGCACCGAGTCGCAGAACGCAATGGCGAACACTGTTAATTGAACATTTCCC 318
consensus_6871#0 TCAGCGATGTTGC------------------CAACGATGCGCTG-------CAGCACTGC 374
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 TCGG--ATGTTGC------------------CAACGATGCGCTG-------CAGCACTGC 356
consensus_6871#2 TTTG--TTTTTACGCTCTTTCTGTTCGTTTGCAGCGTCCGGTTGATTTCGATTGCGGCCC 376
consensus_6871#0 GAANAACGCGCACGAACAGTGCGCCGAGNCTCCGGNGCACGNGGTCGTCCAAAACACCAG 434
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 --AAAACGCGCACGAACAGTGCGCCGAGCTCCGGGCAC---GGGTCGTCCAAAA-ACCAG 410
consensus_6871#2 --AAAACGCGCACGAACAGTGC-CCGAGCTCCGGGCAC---GGGTCGTCCAAAA-ACCAG 429
consensus_6871#0 AACCAGAAATCGTACAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAACCGGCA 494
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 AACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATTTGCAGCCGGCA 470
consensus_6871#2 AACCAGAAATCGTCCAAAGATCGCAAGTACACGCTCACGATGGAAGATT----------- 478
consensus_6871#0 CTGAACCGATNACAGATAATGTGCGCAAAGNCGCACTANTATCNCGGCCCANANCACACN 554
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 CTGAACGATTACGGCATTACTGTTCGCAAAGCGCACTATTTCGTCTAGACAGGGAAGGAG 530
consensus_6871#2 ------------------------------------------------------------
consensus_6871#0 GGAACGNGNN-GCGCACCAACAGCGGCAAGNTACGCACGGTCGCCGNNTGGCACACACAT 613
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 GTTTAGGGTGTGTGTGTGTGTGTGTGCAAATTGC-CACTGGAGGGGGGAAGGTTGTGCAG 589
consensus_6871#2 ------------------------------------------------------------
consensus_6871#0 AAGGACCCACCATCGGGAANNGACGGNACAGGCAAGAAGCCAANACAGCATCCGGCGACA 673
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 GTTGGAAGGGGAAGAGGGAATTACAAGAAGAAAAAAAATGTATCTTTATAATGGGTGGTA 649
consensus_6871#2 ------------------------------------------------------------
consensus_6871#0 ACGGCGNGCGNACGAAAGCGGGCAACTCCACCCACAAAACCAACACANCCACAGCACNTA 733
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 TTATTGAATCCATTCGTAGCGGGAACTTACGGCGCGCACATGAAATTCTAGG-------- 701
consensus_6871#2 ------------------------------------------------------------
consensus_6871#0 CCAACNCAACANAACAAAAATACCCCAACAACAACNCGCACGCACANACACAGGGGCCAA 793
consensus_6871#3 ------------------------------------------------------------
consensus_6871#1 ------------------------------------------------------------
consensus_6871#2 ------------------------------------------------------------
consensus_6871#0 C 794
consensus_6871#3 -
consensus_6871#1 -
consensus_6871#2 -
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||