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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1202 fasta sequence
[ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTCATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATTTGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAAATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGGGCAATTTCGGGTTCTGTTTCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGCGATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGAACAAGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGATCTCTTGATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACGTTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATAATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCACAATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCGCGTCTGCAATACAAATAGAACACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAGAAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAAAGAGATGTATA]
[+] EMBL BX627717 [ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTCATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATTTGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAAATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGGGCAATTTCGGGTTCTGTTTCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGCGATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTAAAACNAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCNATGGTGCCTCAna ]
[+] EMBL BX618330 [ GCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAACTCAGAACCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTATCGCGATCGAACAAGTGCCAACGTCCACCAATCGTACGAAATGCGTTGAAGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGAAGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGAACAAGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGATCTCTTGATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACGTTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGT ]
[+] EMBL BX610898 [ GATGGGATGGTGGTGAGCTACGGCGTAAAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAGGTAGTGGCAATGGTGCCTCAGATCAAGCTGGAGGCGGTAGGAAAGGAAGATGAGAACGATCTCTTGATCGACACGGATTATGATAATGATACCTTCGAAGAGGACATCGATGATCGTTAACGAATGCTTTTTATGCGCAATAGTAGCTAACGACACAGGTTGCAAGTACAAGGGCCTTTTCTATCAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAGAAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATAGTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATAATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCACAATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCGCGTCTGCAATACAAATAGAACACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAGAAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAAAGAGATGTATA]
consensusID : consensus_6872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 887 fasta sequence
[TGCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGTGTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCTGTATGTGCTGATGTTTTTCGAAAATCCCTTCCTGGACATCGAGGAAACGCTAAAGTCGGAACTGATCATACCGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCCCTGCTGGACAAGAACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGAGTGGTTGACGCAAGAAATTAACCCAAGCGCATTCAACTTTGCCCACATAGTGCCCTGTGAACCGTACGAAGTGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACNGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACNGATGCAGTTATCGCGATCGATCAAGTGCCAACGTCCNCCATCGTACGAAATGCGTTGATG]
[+] EMBL BX625187 [TGCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGTGTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCTGTATGTGCTGATGTTTTTCGAAAATCCCTTCCTGGACATCGAGGAAACGCTAAAGTCGGAACTGATCATACCGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCCCTGCTGGACAAGAACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGAGTGGTTGACGCAAGAAATTAACCCAAGCGCATTCAACTTTGCCCACATAGTGCCCTGTGAACCGTACGAAGTGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACNGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACNGATGCAGTTATCGCGATCGATCAAGTGCCAACGTCCNCCATCGTACGAAATGCGTTGATG]
[+] EMBL BM611758 [ ccgACTTCAACGGCCAGATATACTCGAGTCAAACCGGTCTGTCCACCTCACCGCACAGCTTATCGTTGGTGGATGATGAGGATGAAGGCGACGATGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATTGCAGGACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCATACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAACAGCCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTATCGCGATCGATC ]
consensusID : consensus_6872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CCGCGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGGTAATTCAAACGCTTGCTACGCGTACGCAGAACACTCCGTTCCTGTCGTTGTGTCGTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCCCTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGGTGGTGCAGATGGAAGTGGTAACATTGAGTCGAATGCTATATCCATTTCCACGGCCGCCAGCAGCAGCAGCAGCATTCCCGTTCAATGTGTTTCCGAATGTGTGTACAAGCCCAGTACGTTTGAGTGTGATGTCGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAAGGATCCCAAGAGTCGGCTCTGTCTCGACGGCCATCGTAAACAGCCCTTCGCTTTTGCCCCTACAAACAATCGCCTGCGAGGAAACCGCTAGACAAGCGTACAGACGCAGCAATCGGCAGTCCATGTGTGACTCGAGCTGTTCTACTACGCCATCGCTCGCATTGCCGCCCTCTTCCTCGGTGCTGATGTGCACCATGATGCCCTACTCAGTGCTAAATAG]
[+] EMBL BM625341 [CCGCGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAGGAATTCAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACCACCGCGGCAGTGTCTGGCGTTATAGGTACAGGTAATTCAAACGCTTGCTACGCGTACGCAGAACACTCCGTTCCTGTCGTTGTGTCGTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCCCTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGGTGGTGCAGATGGAAGTGGTAACATTGAGTCGAATGCTATATCCATTTCCACGGCCGCCAGCAGCAGCAGCAGCATTCCCGTTCAATGTGTTTCCGAATGTGTGTACAAGCCCAGTACGTTTGAGTGTGATGTCGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAAGGATCCCAAGAGTCGGCTCTGTCTCGACGGCCATCGTAAACAGCCCTTCGCTTTTGCCCCTACAAACAATCGCCTGCGAGGAAACCGCTAGACAAGCGTACAGACGCAGCAATCGGCAGTCCATGTGTGACTCGAGCTGTTCTACTACGCCATCGCTCGCATTGCCGCCCTCTTCCTCGGTGCTGATGTGCACCATGATGCCCTACTCAGTGCTAAATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6872#1 ------------------------------------------------------------
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 ATCGAGCGGCAGCACACCTTAAAAAAGCTCCTTATTTTCGAGTTTTCTTGTATTCCCGTC 60
consensus_6872#1 ------------------------------------------------------------
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 ATGTTGCATAGTCTCATTTTATTTGTATGTGCGGTGAAATTTGTTTTTTCCTCTTATATT 120
consensus_6872#1 -----------------------------------------------------------T 1
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 TGTCTCTTTTGTAAGTAGATTTTCTATTGTTTCTATATTCTATCTATGTGTTGAACACAA 180
consensus_6872#1 GCAGGAAGGCAAGCTGTTTTCCACCTTCTACGGCACCACGGAGTACTGCAGTCCCGAGGT 61
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 ATGTGTACATATGTTGCCTTTTGTTCTGTTCGTGGCCATCTATTATCCCCGTAATAGTGG 240
consensus_6872#1 GTTGGCCGGGAACAAGTACGCCGGACCGGAGCTGGAAATGTGGTCCCTGGGCGTAACGCT 121
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 GCAATTTCGGGTTCTGTT--TCTGTTTTGTATTGTGTTTCGTCTTCGCTATCGTAATGGC 298
consensus_6872#1 GTATGTGCTGATGTTTTTCG--AAAATCCCTTCCTGGACATCGAG-GAAACGC--TAAAG 176
consensus_6872#2 ----------------------------------------CCGCGCGAAACGCA-TGCTG 19
consensus_6872#0 GATCTTCTTTGTGTGGCGAATTGTGATAAAGAAAAAGAGATTGTTTCAATTGTTGTCAAC 358
* ** * *
consensus_6872#1 TCGGAACTGATCATAC---CGCAGGAGATCAGTCCCGAGCTGGAGTACGTGTTGCTGTCC 233
consensus_6872#2 CTGGAACGATATTGGC---CAAAGGAATTCAG----AATCT---CTCCCTACAGGAACCT 69
consensus_6872#0 TCAGATCCGGCCAAGCAAGCGCGTGGAAAGAAGGGACAGCTACGGGCCGAAATGCAGCAA 418
** * * * * * * ** * *
consensus_6872#1 CTG-CTGGACAAGA---ACCCCAAAACGCGCATCACGATGAAGCAACTGATCTGCACGGA 289
consensus_6872#2 TCG-ACATGCAACA---ATCACAGCA-GTACAAT-CGATACCACCGCGGCAGTGTCTGGC 123
consensus_6872#0 CGGTCCGGACATCATGCGCTGCTGGGCATGGGCACGGATGCAGTTACCGCGATCGATCAA 478
* ** * * *** * * *
consensus_6872#1 GTGGTTGACGCAAGAAATTAACCCAAGCGCATTCA-ACTTTGCCCACATAGTGCCCTGTG 348
consensus_6872#2 GTTATAGGTACAGGTAATT----CAAACGCTT----GCTACGCGTACGCAGAACACTCCG 175
consensus_6872#0 GTGCCAACGTCCACCAATCGTACGAAATGCGTTGATGGGATGGTGGTGAGCTACGGCGTA 538
** * *** ** ** * * *
consensus_6872#1 AACCGTACGAAG-TGAACCCGGAAAAGTACTTCAACGGCCAGATATACTCGAGTCAAACC 407
consensus_6872#2 TTCCTGTCGTTG-TGTC---------GTATTTTGGTGGTGGGTCTCAGGCTAATCCTTCC 225
consensus_6872#0 AAGCAAACGAAACTGCAGCAATACTACTGTAAAGATGAGCCGATGCATAATGATGAACAG 598
* ** ** * * * * *
consensus_6872#1 GGTCTGTCCACCTCACCGCACAGCT-TATCGTTGGTGGATGATGAGGATGAAGGCGACGA 466
consensus_6872#2 CTCGTAAATATGTCCCCGGCCGACTGTGGTGGTGCTGG-TGGTGCAGATGGAAGTGGTAA 284
consensus_6872#0 GTAGTGGCAATGGTGCCTCAGAACA-AGCTGGAGGCGGTAGGAAAGGAAGAAGAGAACGA 657
* * ** * * * ** * ** * * *
consensus_6872#1 TGAGGAGGAGGACGAGCCGCATGCTCACATAGACGATTCGTTTGTTGATCCGGATGAATT 526
consensus_6872#2 CATTGAG----TCGAATGCTATATCCATTTCCACGGC-CGCCAGCAGCAGCAGCAGCATT 339
consensus_6872#0 TCTCTTG---ATCGACACGGATTATGAAAATGATACCTTCGAAGAGGACATCGATGAACG 714
* *** ** * * * * * * *
consensus_6872#1 GCAG-GACGATGACATTTGTCCATTGACGCACGACGACGAAAAGCTACCAGAACGATCAT 585
consensus_6872#2 CCCG-TTCAATG-----TGTTTCCGAATGTGTGT-----ACAAGC--CCAGTACGTTTGA 386
consensus_6872#0 TTAACGAAGGCTTTTTATGCGCAATAGTAGCTAACGAC-ACAGGTTGCAAGTACAAGGGC 773
** * * * * ** **
consensus_6872#1 ACGAACTATGCAGTGGACGCGAAACGCATGCTGCTGGAACGATATTGGCCAAAG-GAATT 644
consensus_6872#2 GTGTGATGT-CGTTGAACGTGCAGCCTCCCTGGTCGGTGCAACAGATGCCGAAA-GGATC 444
consensus_6872#0 CTTTTCTAT-CAATGCTTGTGAATAGTCATTTAGAGGAAGAAGGGGAGCAGTAGTAGAAG 832
* * * ** * * * ** * ** * *
consensus_6872#1 CAGAATCTCTCCCTACAGGAACCTTCGACATGCAACAATCACAGCAGTACAATCGATACC 704
consensus_6872#2 CCAAGAGTCGGCTCT------GTCTCGACGGCCATCGTAAACAGCCCT----TCGCTTTT 494
consensus_6872#0 AAGAGTAGAGTGTTATTATCGGTACTATTTCATTTTTGGCACAATCATACAGTTCGCATA 892
* *** * *
consensus_6872#1 ACCGCG-GCAGTGTCTGGCGTTATAGGTACAGATCCGGTCAAGCAAGCGCGTGGAAAGAA 763
consensus_6872#2 GCCCCT-ACAAACAATCGCCT-----GCGAGGAAACCGCTAGACAAGCGTAC----AGAC 544
consensus_6872#0 GTCGCGCGTAAAGAGGCGCCATTCAGAAGTGAAACCAATTCAACAGTAAAGCAACAAATA 952
* * * ** * * ** *
consensus_6872#1 GGGACAGCTAC--NGGCCGAAATGCAGCAACA-GCCCGGACATCATGCGCTGCTGGGCAT 820
consensus_6872#2 GCAGCAATCGG--CAGTCCATGTGTGACTCGA-GCTGTTCTACTACGCCATCGCTCGCAT 601
consensus_6872#0 ATCATAATCACAATGATAGTCAAGCAAACCCATGCTGTGGTGTAGCAAGTAAATTAGCAC 1012
* * * ** ***
consensus_6872#1 GGGCACNGATGCAGT--TATCGCGATCGATCAAGTGCCAACGTCCNCCAT-CGTACGAAA 877
consensus_6872#2 TGCCGCCCTCTTCCT--CGGTGCTGATGTGCA--CCATGATGCCCTACTC-AGTGCTAAA 656
consensus_6872#0 AATTGCTGTGGCCGTGGTGTTATAGAGAAATAGGGGGCG-CGTCTGCAATACAAATAGAA 1071
* * * * * **
consensus_6872#1 TGCGTTGATG-------------------------------------------------- 887
consensus_6872#2 TAG--------------------------------------------------------- 659
consensus_6872#0 CACGCTGTTTCTACTCTTATCTTTTTAACCGTCGCTGAAAACATGTCCTACGTTACATAG 1131
consensus_6872#1 ------------------------------------------------------------
consensus_6872#2 ------------------------------------------------------------
consensus_6872#0 AAGAGAAATAATTTAATACCGTTGTTACAAGCCTCTGAGGAGGGGAGAGCAGAAAGGTAA 1191
consensus_6872#1 -----------
consensus_6872#2 -----------
consensus_6872#0 AGAGATGTATA 1202
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||