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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1856 fasta sequence
[CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGATGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATGAACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGACCAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACCCAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGAAAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGCTGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGACGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCCGAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACGGACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTCGACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCCGCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCGTTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGACGAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATGCG-GCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG]
[+] EMBL CNS09R4O [CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGATGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATGAACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGACCAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACCCAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGAAAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGCTGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGACGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCCGAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTT ]
[+] EMBL CNS092NH [ AATTGTCGGTTGTTTGTAATAGTAATTGATGCATTAGCTAGGAATATTTCGATCGTTGAAAAGTATAAGAGTTTAGTTCAACCAATCCCCCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAA ]
[-] EMBL CNS09R4P [ ATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGCTTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACGGACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTCGACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCCGCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCGTTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGACGAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATGCG GCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCAACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGCTTAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG]
[-] EMBL CNS09B7F [ cTGATCGAGGATATGCGCGCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATTTCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCGACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGA ]
[-] EMBL CNS092NI [ TCGACCACGGCGAAGGGACGAGCGGTGGGACGGCGTAAGAACACGTTCGAACCGGACACGCTGGACGATGTGCTGAGCGTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCATCTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTACAAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACCCCCGGGGGTTGAGCATGCCGGACTACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAGATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACA ]
consensusID : consensus_6880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGACCCGGGAGGGTGGCGTCTGTTTTTTTTATCGCACATCGCTGTGTGTTTACAAAACGCATTAAACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG]
[+] EMBL CNS09B7E [AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGACCCGGGAGGGTGGCGTCTGTTTTTTTTATCGCACATCGCTGTGTGTTTACAAAACGCATTAAACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGCAGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATTAAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTCACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTCCAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCCGTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6880#0 CCCACAGAGCACAGGAGCGGCGCATGCCCGTAATTGTCGGTTGTTTGCAATAGTAATTGA 60
consensus_6880#1 ----------AACCAATCCACCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGG 50
* * * * **** * * * ** *** *
consensus_6880#0 TGCATTAGCTAGGAATATTTCCATCGTTGAAAAGTATAAGCGTTTAGTTCAACCAATCCC 120
consensus_6880#1 ---ACGCGTCGCGTCTGTTCCGCACACCGCAGTCTGTTGTTGTCCGGGAGGTAAACACGA 107
* * * * ** * * * * * * ** * * *
consensus_6880#0 CCCATGAGTTCGTTCACCAGCACACCGCTCCGTAAATCGGACGCGTCGCGTCTGTTCCGC 180
consensus_6880#1 CCCGGGAGGGTGG-CGTCTGTTTTTTTTATCGCACATCG----CTGTGTGTTTACAAAAC 162
*** *** * * * * ** * **** * * ** * *
consensus_6880#0 ACACCGCAGTCTGTTGTTGTCCGGGAGGCCGCAAACGACGATGAAGCCGAACGAAGAAGC 240
consensus_6880#1 GCATTA-AACCCGTTTCACATTTTTAGGCTGCAAACGACGATGAAGCCGAACGAAGAAGC 221
** * * *** **** ******************************
consensus_6880#0 AGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATT 300
consensus_6880#1 AGACGTTCGGAGGTTACGCTCAACGATTCCACAAGCGCCGTGGAGGAAAATGAAAACATT 281
************************************************************
consensus_6880#0 AAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTC 360
consensus_6880#1 AAGATGTGTTTGAAGCTGTACTCGGACAATAAAATGAGCAAAGAAAATGCCTGGTCGCTC 341
************************************************************
consensus_6880#0 ACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTC 420
consensus_6880#1 ACGATCATCGACAGCTTCGCGACGCTCATGTCCCGGCATTCGAAATCGCTGCAGAACTTC 401
************************************************************
consensus_6880#0 CAGGTAGCCGGTTCCACGCTGGAAGCATCGACCAAGGTGTACGGGCTGCGGGTCGACTCC 480
consensus_6880#1 CAGGTAGCCGGTTCCACGCTGGAAGCATCAACCAAGGTGTACGGGCTGCGGGTCGACTCC 461
***************************** ******************************
consensus_6880#0 GTGCACACGGACGTCATGCGCATGTGCTCGGAGCTGACGCGTCAAACGGCGCGCGCCATG 540
consensus_6880#1 GTGCACACGGACGTCATGCGCATGTGCTCTGAGCAG------------------------ 497
***************************** **** *
consensus_6880#0 AACAACAATGCCGCCGACCAGGACGACGAGGAGGCGGGAGGCGAAGGCAATGCGGGCGAC 600
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CAGTCGATGGCCGAGGGTGGCGAAGGGGGCGGCAACAAGGAGAACGAGCAGACCGTCACC 660
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CAGCAGCCGAAGAAGGGAAGAAGCGCACCCGCAAGGTGGTCAGCACGATCACGAAATCGA 720
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 AAGACTCGATCAACGGTCCGCTGGACACGAACCCGTTCATGGATCCGTTCTTCGCCGAGC 780
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TGAACTCGGTCGTCGGTGACGTGAACAGCTCGAGCCGGCTGATGCAGAACATCGTGCCGA 840
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CGAAGCAGTCGGAGCTGCGGCTCGGCATGGACTACGCGTTCTGGGATCGGCGCCATCGCC 900
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GAGCTCGATCTGGACGGCGTGCCGGAAGCGTACGAGGGGCTGGAATGCAGCACGATGCGC 960
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TTTTTGCCCCTCGGGCCGAACAATTCTGTGCGCACGCTACGTTCCGGCTACCTCATCACG 1020
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GACGCACCGGCCGAGGCTGACGAGGACGAGGAGGACGCCCGCACCAACCGGACCTCGCTC 1080
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GACGCGCACATGGACGATGTGGAGGCACGCGATCACAGCGCGGCGCTGCTGAACCGGTCC 1140
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GCGCTGGACGTACACTTTGACATCAACGCGGAGGTGGAACCGGTACCGTCCGGTGACGCG 1200
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TTCATACTTGACTACGATGCGAAGGACATCGACGGCAACGACGACTTTGCGGAGGATGAC 1260
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GAGCTGGCGCTGGAACAGTGCAAGGGGCTGATGCGCAAAACGGTGGTGATCGAGGATATG 1320
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CGGCCGCTCGATACGACCAGCTCGCATCTGGAGTACTCGTACCGGCCGCTCGACAACATT 1380
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TCGCAGTTTTGGGCCGGTCCGGCGCACTGGAAGTTCAAGCGCTCGATGCGACCCCGCTCG 1440
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ACGATGGCCCCGCCGCCCAGCGATACGGCCTCGCAAACGTCATCGACCACGGCGAAGGGA 1500
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CGAGCGGTGGGACGGCGTAAGAAAACGTTCGAACCGGACACGCTGGACGATGTGCTGAGC 1560
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GTGACGGAGACTCTGTTCCAGGAGTACAACCCCAACCGGCCGATCAGGGGCATCACGCAT 1620
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CTGAAGAGTTTGGTGTGCAAGAAGTGGGAGTCGAAAAAGCTGAAGCTGCCCACCGATTAC 1680
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 AAGATCGATCCGAAGCGGTTCGATCTGTACAAGTACGCCCGGGGGTTGAGCATGCCGGAC 1740
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TACGGGGCCCCGAACCACGCACCGTCGGAGGAGTACAACTGTGACGGTGGAGACGATCAG 1800
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ATTTCCTGCAGCAATGACACGAACGATGGCGGTGATAATGACATGAGCCCCCCATG 1856
consensus_6880#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||