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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1681 fasta sequence
[CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAAATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACGAATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCATTTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAGT]
[+] EMBL BM615473 [CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAAATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCGTCAAGAGCGAACCAATTAATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGACGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAATAATTTGGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGAT ]
[+] EMBL CNS09BYT [ aacAACACACGGCATCGAAACCAGCAAAGATTCTACAGAAATTACAGAAATCTCGTGAAAGTAAACAACTATCCTATATCCAGTTACCAAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACGCAGCTTCCTGCAAAGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGGCAACATTTGTTCACGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAATATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTCCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCAGTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTG ]
[+] EMBL BM655195 [ ccgGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCAGCAACGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGATTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGATATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGC ]
[-] EMBL CNS09BYU [ AACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACGAATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCATTTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAGT]
[+] EMBL BM586098 [ ccgAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGCTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACAT ]
consensusID : consensus_6881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[CCGGAAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGT]
[+] EMBL BM624890 [CCGGAAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6881#0 CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAA 60
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 ATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAA 120
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 TAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTG 180
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCG 240
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCATCAAGAGCGAACC 300
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGT 360
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 TTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAA 420
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 TTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAG 480
consensus_6881#1 --------------------------------------------------------CCGG 4
*
consensus_6881#0 AAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCG 540
consensus_6881#1 AAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCG 64
**** *** ***************************************************
consensus_6881#0 ATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAA 600
consensus_6881#1 ATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAA 124
************************************************************
consensus_6881#0 GGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGT 660
consensus_6881#1 GGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGT 184
************************************************************
consensus_6881#0 TTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAAC 720
consensus_6881#1 TTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAAC 244
************************************************* **********
consensus_6881#0 CGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAA 780
consensus_6881#1 CGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAA 304
********************************** *************************
consensus_6881#0 AACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTA 840
consensus_6881#1 AACTCACCAAACTTGA------------------------------------ACCGCTTA 328
**************** ********
consensus_6881#0 TCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCT 900
consensus_6881#1 TCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCT 388
************************************************************
consensus_6881#0 TGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTA 960
consensus_6881#1 TGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTA 448
************************************************** *********
consensus_6881#0 ATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAA 1020
consensus_6881#1 ATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAA 508
**************************************************** *******
consensus_6881#0 AATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATC 1080
consensus_6881#1 AATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATC 568
**************************************** *******************
consensus_6881#0 TCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAA 1140
consensus_6881#1 TCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAA 628
************************************************************
consensus_6881#0 AGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCAC 1200
consensus_6881#1 AGT--------------------------------------------------------- 631
***
consensus_6881#0 ACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTT 1260
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 ATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGAT 1320
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 CTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATA 1380
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAG 1440
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 TAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGG 1500
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACG 1560
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 AATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCAT 1620
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 TTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAG 1680
consensus_6881#1 ------------------------------------------------------------
consensus_6881#0 T 1681
consensus_6881#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||