cluster # 6882

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Anopheles gambiae
cluster # 6882 cluster # 6882 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6882#0 length = 1173 sequences # 3

consensus_6882#1 length = 519 sequences # 3

consensusID : consensus_6882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1173
fasta sequence

                              [TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAACAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTGAAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACCAGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCCGTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATTTTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGA--G-AA-GGT-TGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG--TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCCGAAGTTGTCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTATCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCGTCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCATTTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATAGTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGCAGACTCTTGACGTCCTCGGACGACTCCGAGCGACT]

[+] EMBL BX628868             [TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAACAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTGAAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACCAGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCCGTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATTTTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGA  G AA GGT TGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAGAAGGCGGTATATCAAGAGCCGCCGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM651716             [                                                                                                                                                                                                                                                                                                                  ccgAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGACTGCAACTCTCTGCAGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG  TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM611904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG  TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCCGAAGTTGTCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTATCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCGTCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCATTTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATAGTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGCAGACTCTTGACGTCCTCGGACGACTCCGAGCGACT]




>consensus_6882#0
TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAA
CAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTG
AAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACC
AGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCC
GTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATT
TTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGT
AGAGAGAAGGTTGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCC
GTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGT
TAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTAT
TGCCACTGCTCCCACAAGTGATTAAAAGGCAGTATCAAGAGCCGCCGAAAGAGGTGTTTC
GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGA
AGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGA
ACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACT
GTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCCGAAGTTGTC
TGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTATC
CGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCGTC
TGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCATTT
CATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATAGT
CCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGCAG
ACTCTTGACGTCCTCGGACGACTCCGAGCGACT

consensusID : consensus_6882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 519
fasta sequence

                              [GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGAAGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTATCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTCGAATAGGAAATACGAAATCAAATGCCTCCGGACGACTTCGGACGATTCCGGACAACACCAGACAACTCCGGACAACTCCAGACAACTCCGGACGACTTCGGACGACTTCAGACAACCCCGGACGACTCCAGACAACTCCGGACAACTCCGGACGACTCTGCCTCCGGATAGCTCCGAACGACTCGA]

[+] EMBL BX616034             [GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGAAGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTT                                                                                                                                                                                                                                                                             ]
[+] EMBL BX615195             [                                                                TCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCG                                                                                                                                                                                                                                                                  ]
[+] EMBL BX616875             [                                                                                                                                             ATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTATCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTCGAATAGGAAATACGAAATCAAATGCCTCCGGACGACTTCGGACGATTCCGGACAACACCAGACAACTCCGGACAACTCCAGACAACTCCGGACGACTTCGGACGACTTCAGACAACCCCGGACGACTCCAGACAACTCCGGACAACTCCGGACGACTCTGCCTCCGGATAGCTCCGAACGACTCGA]




>consensus_6882#1
GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGA
AGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAG
AACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGAC
TGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTC
TTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTATCCAGAGTT
ATCCAGAGACATCTGGAGTCAACGAAGTCGGTCGAATAGGAAATACGAAATCAAATGCCT
CCGGACGACTTCGGACGATTCCGGACAACACCAGACAACTCCGGACAACTCCAGACAACT
CCGGACGACTTCGGACGACTTCAGACAACCCCGGACGACTCCAGACAACTCCGGACAACT
CCGGACGACTCTGCCTCCGGATAGCTCCGAACGACTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6882#0      TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAA 60
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      CAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTG 120
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      AAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACC 180
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      AGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCC 240
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      GTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATT 300
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      TTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGT 360
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      AGAGAGAAGGTTGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCC 420
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      GTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGT 480
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      TAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTAT 540
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      TGCCACTGCTCCCACAAGTGATTAAAAGGCAGTATCAAGAGCCGCCGAAAGAGGTGTTTC 600
consensus_6882#1      ------------------------------------------------------------
                                                                                  

consensus_6882#0      GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGA 660
consensus_6882#1      GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGA 60
                      ****************************************** ************** **

consensus_6882#0      AGCTTCTATCCGCACATTCTTTTCCCC-TCTTCTTGTTGCAAGTTCGAACCTAGCCGTAG 719
consensus_6882#1      AGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAG 120
                      *************************** ********************************

consensus_6882#0      AACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGAC 779
consensus_6882#1      AACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGAC 180
                      ************************************************** *********

consensus_6882#0      TGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCC-GAAGTTG 838
consensus_6882#1      TGTAGGTCCGCCCAGC--------ATTACC-CAGGGCCGGTTGGAATCATCCCGGAGCCG 231
                      ********* ******        ** *   * * **** * *** ** *** * **  *

consensus_6882#0      TCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTA 898
consensus_6882#1      CTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTA 291
                         *  *** ** ****** *  * *** *** **************  **** ******

consensus_6882#0      TCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCG 958
consensus_6882#1      TCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTC--GAAT------AGGAAA 343
                      *** ***    ******  *** ******* *    *  ***  ** *        *   

consensus_6882#0      TCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCAT 1018
consensus_6882#1      TACGAAATCAAATGCCTCCGGACGACTTCGGACG-----ATTCCGGACAACACCAGACAA 398
                      *  * * ***   *    *** *** *  *****     **   *   *    *** ** 

consensus_6882#0      TTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATA 1078
consensus_6882#1      CTCCGGACAACTCCAGACAACTCCGGA---CGACTTCGGACGACTTC--------AGACA 447
                       **    *   * * ***  ***       **   **  **  **          *** *

consensus_6882#0      GTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGC 1138
consensus_6882#1      ACCCCGGACGA----------CTCCAGAC------------AACTCCGGACAACTCCGGA 485
                        ** **   *          * * *  *            *** *   *   **** * 

consensus_6882#0      AGACTCTTGACGTCCTCGGACGACTCCGAGCGACT--- 1173
consensus_6882#1      CGACTCT----GCCTCCGGATAGCTCCGAACGACTCGA 519
                       ******    * *  ****   ****** *****