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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1119 fasta sequence
[CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA]
[+] EMBL BM651450 [CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCGATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCATGATAAGAAAATGCGCGTAACAGCGCACAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAA ]
[+] EMBL BM612279 [ ccGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGG ]
[+] EMBL BX628301 [ TCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGT AGGGGGTGGGGTACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCG ]
[+] EMBL AGA285557 [ ATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGTAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACAC ]
[-] EMBL AGA284257 [ GGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA]
consensusID : consensus_6884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA]
[+] EMBL BM581065 [CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6884#0 -CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 59
consensus_6884#1 CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 60
* ************* ******************************************
consensus_6884#0 CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 119
consensus_6884#1 CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 120
************************************************************
consensus_6884#0 CACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACAC-- 177
consensus_6884#1 CACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCC 180
****************************** ********************** ***
consensus_6884#0 ------------AGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 225
consensus_6884#1 ACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 240
************************************************
consensus_6884#0 ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAG 285
consensus_6884#1 ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAG 300
****************************************** *****************
consensus_6884#0 CAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATA 345
consensus_6884#1 AAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATA 360
******************************************* ***************
consensus_6884#0 AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTG 405
consensus_6884#1 AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTG 420
*********************************** ********* **************
consensus_6884#0 GAAAACAAAACGCCCGGAAAACATAAAA---CATAAAATTGCCTTCATCCTCAGAGGCGC 462
consensus_6884#1 GAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGC 480
*********************** **** *****************************
consensus_6884#0 CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGG 522
consensus_6884#1 CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGG 540
**************************************** **** ***** ********
consensus_6884#0 CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 582
consensus_6884#1 CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 600
************************************************************
consensus_6884#0 AGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAA 642
consensus_6884#1 AGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA----------------------- 637
***************** *******************
consensus_6884#0 ATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGA 702
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 CATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGG 762
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 CGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGT 822
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 GTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACT 882
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 AGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCG 942
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 AAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCC 1002
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 CCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAAT 1062
consensus_6884#1 ------------------------------------------------------------
consensus_6884#0 TATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA 1119
consensus_6884#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||