These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [TCTAGTGTTTTAGGCAACAAATAGGACAGCTCAACGATCCAAAGGTCGACGGAAGAGGTCATTTTGCATCTTCTTTGGGGGTACGGCTTCAGTGTGAACCACCTCCTTAGTATCCCAGCTCCCAGCCAATGGTGCCACATCATAGCAGCTGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAGTGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAAATAAAGCAG] [+] EMBL CNS09QMH [TCTAGTGTTTTAGGCAACAAATAGGACAGCTCAACGATCCAAAGGTCGACGGAAGAGGTCATTTTGCATCTTCTTTGGGGGTACGGCTTCAGTGTGAACCACCTCCTTAGTATCCCAGCTCCCAGCCAATGGTGCCACATCATAGCAGCTGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTG ] [-] EMBL CNS09QMI [ AGCAGTTGAAACACACCGTCCAGCTGAACCAGTTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACAACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTAACTTCCTAACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAGTGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAAATAAAGCAG] consensusID : consensus_6895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 755 fasta sequence [CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGAAGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG-GG--GTGTGTGT-T--TGTGGGTGTT---A-GGGGTTGACGG-CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT-CCGCAACCACCACCCTCCCCAATACCC-TCCCCCTACCTCCCACCATATCGTTACACGATCT] [+] EMBL BX613319 [CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGAAGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGTGGT GTGTGTGT G TGTGGGTGTT A GGGGTTGACGG CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT CCGCAACCACCACCCTCCCCAATACCC ] [+] EMBL BX620493 [ AACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAAAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAAT TGGGACCTACGCGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACCTTTGTGTGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GG GTGTGTGT T TGTGGGTTTT G GGGGNTGACGG CCAGTACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTGTTTTTGGNTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGT GAGGGTATGGGTCAGCAAGTATGCAACCACCTCTT CCACGACCACCACCATCCCCNATACCC TCCCCCTACCTCCCACCATATCGTTACACGATCT] [+] EMBL BM612511 [ CCG GGAGAATCCCTGCATCGGGAAATCGGGGACCTACGCGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGACGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GGGTGTGTGTGT TGGTGTGGGTGTTTTAAGGGGGTTGACGGCCCAGTACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTGTTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTATACGCGTAAGCGTGTAAGCGAGAGTATGGGTCAGCAAGCTTGCAACCTCCTCTTCCCACAACCACCACCCTCCCCAATACCCACCCCCCTACCTCCCACC ] [+] EMBL BX617241 [ CCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGTAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GG GTGTGTGTGTG TGTGGGTGTT A GGGGTTGACGG CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT CCGCAACCACCACCCTCCCCAATACCC TCCCCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6895#0 ------------------------------------------------------------ consensus_6895#1 CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGA 60 consensus_6895#0 ---------------------TCTAGTGTTTTAGGC-AACAAATAGGACAGCTCAACGAT 38 consensus_6895#1 AGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGT 120 * * ** * * ** * * ** ** ***** * consensus_6895#0 CCAAAG--GTCGACGGAAGAGGTCATTTTGC--ATCTTCTTTGGGGGTACGGCTTCAGTG 94 consensus_6895#1 GGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAA 180 ** * * *** * * * ** * * ** * * * ** ** consensus_6895#0 TGAAC------CACCTCCTT---AGTATCCCAGCTCCCAGCCAATGGTG--CCACATCAT 143 consensus_6895#1 CGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGC 240 **** ** *** ** ***** ** * * ** * * ** consensus_6895#0 AGCAGC---TGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGC 200 consensus_6895#1 AGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAG- 299 **** * *** * ** * * * ** * * * * * * consensus_6895#0 GCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAA 260 consensus_6895#1 ACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAA 359 * * **** * * ******************************************** consensus_6895#0 ATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCG 320 consensus_6895#1 ATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCG 419 ***************************************************** ****** consensus_6895#0 GGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACA 380 consensus_6895#1 GGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACA 479 ************************************************************ consensus_6895#0 ATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGT 440 consensus_6895#1 ATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTTTGT------GGGTGT 533 ******************************************** *** ****** consensus_6895#0 TAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTG 500 consensus_6895#1 TAGGGGTTGACGGCCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTG 593 ******************** ************************************** consensus_6895#0 TATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGT 560 consensus_6895#1 TATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGT 653 ********************************************************* ** consensus_6895#0 GTGAG---GGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCC 617 consensus_6895#1 GTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTTCCGCAACCACCACCCTCCC 713 ** ** ** * ***** ****** ******* ******** **************** consensus_6895#0 CAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCA 677 consensus_6895#1 CAATACCCTCCCCCTACCTCCCACCATATCGTTACACGATCT------------------ 755 ****************************** *********** consensus_6895#0 AAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTG 737 consensus_6895#1 ------------------------------------------------------------ consensus_6895#0 TTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGAT 797 consensus_6895#1 ------------------------------------------------------------ consensus_6895#0 TGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAG 857 consensus_6895#1 ------------------------------------------------------------ consensus_6895#0 TGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAA 917 consensus_6895#1 ------------------------------------------------------------ consensus_6895#0 ATAAAGCAG 926 consensus_6895#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||