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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1008 fasta sequence
[AGCGACAAACGAAAAGCAGACAACACACGCACGGGATCCAGACAGAGGTACGAAAAGTGTTGGCAATCGAGTCCTGACGATCCTTTTTTTGCGCCCCGCCAGCTGCTCGTTTTGCTGGAAGTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATAGGCCACGGCCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTGAAAAAACGCA---AAGAAAAAAA-ACACACACACATTGGGATATCGTGTGGTGAGGTGGGGGGGGGGAAACAGTCCCCAAAACGACGGCGTTTGTGTAGATCCCGCTGATTCCCGCGGGGGGCGAACAGGAACAGGCAGCAAAACAAAGGGCAATCAGCATAAAGCATGAGAGCACAACGACGACACAACGGCTGCGGGAACAATC-GAGTAACGAAGGCT-GTCGTCGTTGTCGTCGGATCGCAGTTGGCTGGTCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGACGCTTGCTAGGG---TTTGTCTGCCACTTTCGGTCTCGGTTGCTCCAAATCTCCAGTGTTTGAGTGCGTGTGTTGAGGAGAAACAACCCGTTCCCGTCCAGCTGAATATACTGAGCGCCACTGTCGAGTGTGTTTTGCTCCCAGCGCTGTTCCAATTCTTGCCTTTGCCGTGCATCTAGTCGGGCCTGAAACAACCCAAACGCACAGGTTCATCCGTATCCGTGTTCCGTCATAAGCCCGCGTGTATTCTGGTCGCGCACGCCTGCGTGAGGTGCTGCATGGTGTGATGATCGCGATGACAGATAATAATCGTTAACCTGAGATTAAATTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGTTGTGAAA-AGTGAACAGATTTAGAGTTTATCGGAGTAAAACGTGTGGACACCATTATGCTACTGTA]
[+] EMBL CNS08FHW [AGCGACAAACGAAAAGCAGACAACACACGCACGGGATCCAGACAGAGGTACGAAAAGTGTTGGCAATCAAGTCCTGACGATCCTTTTTTTGCGCCCCGCCAGCTGCTCGTTTTGCTGGAAGTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATAGGCCACGGCCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTGAAAAAACGCA AAGAAAAAAA ACACACACACATTGGGATATCGTGTGGTGAGGTGGGGGGGGGGAAACAGTCCCCAAAACGACGGCGTTTGTGTAGATCCCGCTGATTCCCGCGGGGGGCGAACAGGAACAGGCAGCAAAACAAAGGGCAATCAGCATAAAGCATGAGAGCACAACGACGACACAACGGCTGCGGGAACAATC GAGTAACGAAGGCT GTCGTCGTTGTCGTCGGATCGCAGTTGGCTGGTCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGACGCTTGCTAGGG TTTGTCTGCCACTTTCGGTCTCGGTTGCTCCAAATCTCCAGTGTTTGAGTGCGTGTGTTGAGGAGAAACAACCCGTTCCCGTCCAGCTGAATATACTGAGCGCCACTGTCGAGTGTGTTTTGCTCCCAGCGCTGTTCCAATTCTTGCCTTTGCCGTGCATCTAGTCGGGCCTGAAACAACCCAAACGCACAGGTTCATCCGTATCCGTGTTCCGTCATAAGCCCGCGTGTATTCTGGTCGCGCACGCCTGCGTGAGGTGCTGCATGGTGTGATGATCGCGATGACAGATAATAATCGTTAACCTGAGATTAAATTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGTTGTGAAA AGTGAACAGATTTAGAGTTTAT ]
[+] EMBL BM607761 [ ccgCGAAAAGCAGACAACACACGCACGGGATCCAGACAGAGGTACGAAAAGTGTTGGCAATCGAGTCCTGACGATCCTTTTTTTGCGCCCCGCCAGCTGCTCGTTTTGCTGGAAGTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATAGGCCACGGTCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTGAAAAAACGCAAAGAAGAAAAAAACACACACACACATTGTGATATCGTGTGGTGAGGT GGGGGGAAAACAGTCCCCAAAACGACGGCGTTTGTGTAAATCCCTCTGATACCCGCGGGGGACGAACAGGAACAGGCAGCAAAACAAAGGGCAACCAGCATAAAGCATGAGAGCACAACGACGACACAACGGCTGCGGGAACAATCGGAGTAACGAAGGCTGGTCGTCGTTGTCGTCGGATCGCAGTTGGCTGGTCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGT ]
[+] EMBL BM593278 [ CCGGACAGAGGTACGAAAAGTGTTGGCAATCGAGTCCTGACGATCCTTTTTTTGCGCCCCGCCAGCTGCTCGTTTTGCTGGAAGTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATAGGCCACGGTCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTGAAAAAACGCAAAGAAGAAAAAAACACACACACACATTGTGATATCGTGTGGTGAGGT GGGGGGAAAACAGTCCCCAAAACGACGGCGTTTGTGTAAATCCCTCTGATACCCGCGGGGGACGAACAGGAACAGGCAGCAAAACAAAGGGCAACCAGCATAAAGCATGAGAGCACAACGACGACACAACGGCTGCGGGAACAATC GAGTAACGAAGGCT GTCGTCGTTGTCGTCGGATCGCAGTTGGCTGGTCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGACGCTTGCTAGGGTTTTTTGTCTGCCACTTTCGGTCTCGGTTGCTCCAAATC ]
[-] EMBL CNS08FHX [ gaAATTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATAGGCCACGGCCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTGAAAAAACGCA AAGAAAAAAA AAAAACACACATTGGGTTATCGTGTGGTGAGGTGGGGGGGGGGAAACAGTCCCCAAAACGACGGCGTTTGTGTAGATCCCGCTGATTCCCGCGGGGGGCGAACAGGAACAGGCAGCAAAACAAAGGGCAATCAGCATAAAGCATGAGAGCACAACGACGACACAACGGCTGCGGGAACAATC GAGTAACGAAGGCT GTCGTCGTTGTCGTCGGATCGCAGTTGGCTGGTCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGACGCTTGCTAGGG TTTTTCTGCCACTTTCGGTCTCGGTTGCTCCAATTCTCCAGTGTTTGAGTGCGTGTGTTGAGGAGAAACAACCCGTTCCCGTCCAGCTGAATATACTGAGCGCCACTGTCGAGTGTGTTTTGCTCCCAGCGCTGTTCCAATTCTTGCCTTTGCCGTGCATCTAGTCGGGCCTGAAACAACCCAAACGCACAGGTTCATCCGTATCCGTGTTCCGTCATAAGCCCGCGTGTATGCTGGTCGCGCACGCCTGCGTGAGGTGCTGCATGGTGTGATGATCGCGATGACAGATAATAATCGTTAACCTGAGATTAAATTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGTTGTGAAACAGTGAACAGATTTAGAGTTTATCGGAGTAAAACGTGTGGACACCATTATGCTACTGTA]
consensusID : consensus_6896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GATCGGCCCAGGGTTAAGTGGCAACTGGTTACTAGCGGCCGTGTGCCGGGTTCCTACATCCAGCCCCAGGCCCCAGAATCTATTTAGCAAAGTAAACTTAACGAACTTTATAGAGTGAATCAGTTAGTTGTACGCGTGGTACGGGTACTAAATGGGCATGTGTTACACGTTTCGGGTAGAGCGGCGATGATCGCGATGACAGACTAATAATCGTTAACCTGCAGATTAANCTTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGGTGTGAAACAGTGAACAGATTTCAGAGTTCTATACGGAGTAAAACGTGTGGACAACCCAGCNATTGCTACTAAAANATCCAAATACTACTACTACTACTACAACTCATTTACACACTACTTACCCAAACCTACTTACTAANGTTACTAACACNAACAAACACGAACAACAAACTATANCGGTGTNNCGGTCGAAGATGCCTGAACAAATCTTACGNTACCTACGGAACCCGTATGAACCCCGTNNGCACGCACAGGGCTGGGTATATAAGGTANTAATGGCCCATTAGGAGTTTCAAGGCTAGTTGTACAGTCGCCGGCGGGGATTGCACATTGCGNAACAGGGGTGAAGCN]
[+] EMBL AL695977 [GATCGGCCCAGGGTTAAGTGGCAACTGGTTACTAGCGGCCGTGTGCCGGGTTCCTACATCCAGCCCCAGGCCCCAGAATCTATTTAGCAAAGTAAACTTAACGAACTTTATAGAGTGAATCAGTTAGTTGTACGCGTGGTACGGGTACTAAATGGGCATGTGTTACACGTTTCGGGTAGAGCGGCGATGATCGCGATGACAGACTAATAATCGTTAACCTGCAGATTAANCTTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGGTGTGAAACAGTGAACAGATTTCAGAGTTCTATACGGAGTAAAACGTGTGGACAACCCAGCNATTGCTACTAAAANATCCAAATACTACTACTACTACTACAACTCATTTACACACTACTTACCCAAACCTACTTACTAANGTTACTAACACNAACAAACACGAACAACAAACTATANCGGTGTNNCGGTCGAAGATGCCTGAACAAATCTTACGNTACCTACGGAACCCGTATGAACCCCGTNNGCACGCACAGGGCTGGGTATATAAGGTANTAATGGCCCATTAGGAGTTTCAAGGCTAGTTGTACAGTCGCCGGCGGGGATTGCACATTGCGNAACAGGGGTGAAGCN]
consensusID : consensus_6896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[CCGGACGGCGTTTGTGTAGATCCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGAGGCTTGCTAGGGTTTTGTCTACCAACTTCGGTCTTGGTTGCTCCAAATCTTCAGTGTTTGAGTGCGTGTGCTGAAGAGAAACAACCCGTTCCCGTCCAACTGAATATACTGAGCGCCACTGTCGAGTGTGTTTTGCTCCCAGCCGCTGTTTCAATTCTTGCCTTTGCCGTGC]
[+] EMBL BM578588 [CCGGACGGCGTTTGTGTAGATCCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGAGGTAACCCACGCAAAACGCAATTAAGCATTAACAGATCCAGCCGTGACGAGGCTTGCTAGGGTTTTGTCTACCAACTTCGGTCTTGGTTGCTCCAAATCTTCAGTGTTTGAGTGCGTGTGCTGAAGAGAAACAACCCGTTCCCGTCCAACTGAATATACTGAGCGCCACTGTCGAGTGTGTTTTGCTCCCAGCCGCTGTTTCAATTCTTGCCTTTGCCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6896#0 AGCGACAAACGAAAAGCAGACAACACACGCACGGGATCCAGACAGAGGTACGAAAAGTGT 60
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 TGGCAATCGAGTCCTGACGATCCTTTTTTTGCGCCCCGCCAGCTGCTCGTTTTGCTGGAA 120
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 GTCTGCGATTGCCGAATTCGAGGGTGGTTTGTGCAGGTTAAGTCCGTACGGAAGGGAATA 180
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 GGCCACGGCCGTATCGCCACCACACCAACCACCTACATCAACCAGTGTCATATTGTTGTG 240
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 AAAAAACGCAAAGAAAAAAAACACACACACATTGGGATATCGTGTGGTGAGGTGGGGGGG 300
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 -------------------GATCGGCCCAGGGTTAAGTGGCAACTGGTTACTAGCGGCCG 41
consensus_6896#0 GGGAAACAGTCCCCAAAACGACGGCGTTTGTGTAGATCCCGCTGATTCCCGCGGGGGGCG 360
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 TGTGCCGGGTTCCTACATCCAGCCCCAGGCCCCAGAATCTATTTA-----GCAAAGTAAA 96
consensus_6896#0 AACAGGAACAGGCAGCAAAACAAAGGGCAATCAGCATAAAGCATGAGAGCACAACGACGA 420
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 CTTAACGAACTTTATAGAGTGAATCAGTTAGTTGTACGCGTGGTACGGGTACTAAATGGG 156
consensus_6896#0 CACAACGGCTGCGGGAACAATCGAGTAACGAAGGCTGTCGTCGTTGTCGTCGGATCGCAG 480
consensus_6896#2 -------------------------------------------------CCGGACGGCGT 11
consensus_6896#1 CATGTGTTACACGTTTCGGGTAGAGCGGCGATGATCGCGATGACAGACTAATAATCGTTA 216
* *
consensus_6896#0 TTGGCTGG--TCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGA-GGTAACCC 537
consensus_6896#2 TTGTGTAGATCCCGCTTTGCTGCCAGTGAAATTGGCATTCCGCCTGCTCGA-GGTAACCC 70
consensus_6896#1 ACCTGCAGATTAANCTTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGGTGTGAA 276
* *** ** * * * *** *** ** ***
consensus_6896#0 ACGCAAAACGCAATTAAGCATTA---ACAGATCCAGCCGTGACGACGCTTGCTAGGGTTT 594
consensus_6896#2 ACGCAAAACGCAATTAAGCATTA---ACAGATCCAGCCGTGACGAGGCTTGCTAGGGTTT 127
consensus_6896#1 ACAGTGAACAGATTTCAGAGTTCTATACGGAGTAAAACGTGTGGACAACC-CAGCNATTG 335
** *** * ** ** ** ** ** * **** ** * **
consensus_6896#0 -GTCTGCCACTTTCGGTCTCGGTTGCTCCAAATCTCCAGTGTTTGAGTGCGTGTGTTGAG 653
consensus_6896#2 TGTCTACCAACTTCGGTCTTGGTTGCTCCAAATCTTCAGTGTTTGAGTGCGTGTGCTGAA 187
consensus_6896#1 CTACTAAAANATCCAAATACTACTACTACTACTACAACTCATTTACACAC---TACTTAC 392
** * * * * ** * * * *** * * * *
consensus_6896#0 GAGAAACAACCCGTTCCCGT--CCAGC-TGAATATAC-TGAGCGCCACTGTCGAGTG-TG 708
consensus_6896#2 GAGAAACAACCCGTTCCCGT--CCAAC-TGAATATAC-TGAGCGCCACTGTCGAGTG-TG 242
consensus_6896#1 CCAAACCTACTTACTAANGTTACTAACACNAACAAACACGAACAACAAACTATANCGGTG 452
** * ** * ** * * * ** * ** ** * ** * * * **
consensus_6896#0 TTTTGCTCCCAGC-GCTGTTCCAATTCTTGCCTTTGCCGTGCATCTAGTCGGG--CCTGA 765
consensus_6896#2 TTTTGCTCCCAGCCGCTGTTTCAATTCTTGCCTTTGCCGTGC------------------ 284
consensus_6896#1 TNNCGGTCGAAGATGCCTGAACAAATCTTACGNTACCTACGGAACCCGTATGAACCCCGT 512
* * ** ** ** *** **** * * * *
consensus_6896#0 AACAACCCAAACGCACAGGTTCATCCG-TATCCGTGTTCCGTCATAAGCCCGCGTGTATT 824
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 NNGCACGCACAGGGCTGGGTATATAAGGTANTAATGGCCCATTAGGAGTTTCAAGGCTAG 572
consensus_6896#0 CTGGTCGCGCACGCCTGCGTGAGGTGCTGCATGGTGTGATGATCGCGATGACAGATAATA 884
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 TTG--TACAGTCGCCGGCGGGGATTGC-ACATTGCGNAACAGGGGTGAAGCN-------- 621
consensus_6896#0 ATCGTTAACCTGAGATTAAATTAATTGACTATTGCGCGGATATTACGCGCGCGTACCGTT 944
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 GTGAAAAGTGAACAGATTTAGAGTTTATCGGAGTAAAACGTGTGGACACCATTATGCTAC 1004
consensus_6896#2 ------------------------------------------------------------
consensus_6896#1 ------------------------------------------------------------
consensus_6896#0 TGTA 1008
consensus_6896#2 ----
consensus_6896#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||