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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 921 fasta sequence
[GCCGAGGGGTTTTGTGGCGTGCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC-AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC-GGCACAGCCAACGAGCACGCAAACGC-AACCAAGTGGCCGGCCTGCCGGGCA-TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACCTGNTGGACCACTTTATGATCGCTTACGGTCT]
[+] EMBL AL696009 [GCCGAGGGGTTTTGTGGCGTGCGTAAACAACAAGTGTCGATTGTCAGTCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCAGGCACAG CAACGAGCACGCAAACGCAAACCAAGTGGCCGGCCTGCCGGGCATTTGCGGGCATCCTGTTGATCGTCGTAGGA ]
[+] EMBL BX621758 [ cCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCG ]
[+] EMBL BX627940 [ CGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACA ]
[+] EMBL BX627274 [ TGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTC AATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGC GGCACAGCCAACGAGCACGCAAACGC AACCAAGTGGCCGGCCTGCCGGGCA TTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCGCAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGGCCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCAAATACCATCTGGACAGGGCACTGGAGGAGCGTTTACCCCGCCACACGAGCAGCATACCGAAGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACCTGNTGGACCACTTTATGATCGCTTACGGTCT]
consensusID : consensus_6897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[GATCGCCGAGGTAGTGTCGATTGTCAGCCACCCAGACAGTCTCTCGATTCTCTCTCCATACTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCGGACAGG]
[+] EMBL AL931898 [GATCGCCGAGGTAGTGTCGATTGTCAGCCACCCAGACAGTCTCTCGATTCTCTCTCCATACTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACAAAAGACGTTTACACGTTTGGGTCTGCGAAGACCCACACCATTATTCGCTCATTATCCTTCCGAGAAAAAGGGGTTGCGAGAAACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACAAAGCTGAAGCAATGTTGCGGACAGG]
consensusID : consensus_6897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCTGCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGAAACAGGATTTC]
[+] EMBL BX466226 [CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCAGACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCCTTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTTCCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTTGTGTGTGTAATTATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTGGAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCTGCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGAAACAGGATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6897#0 GCCGAGGGGTTTTGTGGCGTGCG-TAAAC-----AACAAGTGTCGATTGTCAGCCACCCA 54
consensus_6897#1 --------------------GAT-CGCCG-----AGGTAGTGTCGATTGTCAGCCACCCA 34
consensus_6897#2 --CAGAATCGCCACGAGGNGGACGTGCCGTAAACAACAAGTGTCGATTGTCAGCCACCCA 58
* * **********************
consensus_6897#0 GACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCC 114
consensus_6897#1 GACAGTC-TCTCGATTCTCTCTCCATAC-TCCCTCTCGTCATAGAAGTGTTCGCATTTCC 92
consensus_6897#2 GACAGTCCTCTCGATTCTCTCTCCATACCTCCCTCTCGTCATAGAAGTGTTCGCATTTCC 118
******* ******************** *******************************
consensus_6897#0 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 174
consensus_6897#1 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 152
consensus_6897#2 TTTGTGTGCCGGTGAAACTAAAAGTCAATTAGTGTAGTTTCCGAAGATTGTTGCTCCTTT 178
************************************************************
consensus_6897#0 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 234
consensus_6897#1 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 212
consensus_6897#2 CCTTGGGACGCGAACAAGAAACCCGTTCATGCGTGTGCGTGCGTGTGTGTGTGTGTGTGT 238
************************************************************
consensus_6897#0 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 294
consensus_6897#1 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 272
consensus_6897#2 GTGTGTCAATTATCGAATCCTTTGCTTCCTCGCTTTATGAGCCGACTCTTGTGTGACTTT 298
************************************************************
consensus_6897#0 TGTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 354
consensus_6897#1 -GTGTGTGTAATTAATACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 331
consensus_6897#2 -GTGTGTGTAATTA-TACGAGCACTTCACCAGCCTCTGGCAGAGGCTTCGGTTACGGTTG 356
************* *********************************************
consensus_6897#0 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACAC-AAAAGACGTTTACACGTTTGGGTCT 413
consensus_6897#1 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACAC-AAAAGACGTTTACACGTTTGGGTCT 390
consensus_6897#2 GAGGAAGAAAGTTTTCCACCCTCCTTTCCGACACGAAAAGACGTTTACACGTATGGGTCT 416
********************************** ***************** *******
consensus_6897#0 GCGAAGACCCA-CACC-ATTATTCGCTCATTATCCTTCCGAGAAAAA-GGGGTTGCGAGA 470
consensus_6897#1 GCGAAGACCCA-CACC-ATTATTCGCTCATTATCCTTCCGAGAAAAA-GGGGTTGCGAGA 447
consensus_6897#2 GCGAAGACCCAGCACNCATTATTCGCTCATTATCCTTCCGAGAANAAAGGGGTTGCGAGA 476
*********** *** *************************** ** ************
consensus_6897#0 AACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACA 530
consensus_6897#1 AACAGGATTTCCCTCCAGAAAAGTGCATCCAAGACATAGTGGTGTGTGTGTGAGCCGACA 507
consensus_6897#2 AACAGGATTTC------------------------------------------------- 487
***********
consensus_6897#0 AAGCTGAAGCAATGTTGCGGCACAGCCAACGAGCACGCAAACGCAACCAAGTGGCCGGCC 590
consensus_6897#1 AAGCTGAAGCAATGTTGCGG-ACAGG---------------------------------- 532
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 TGCCGGGCATTGCGGGCATCCTGTTGATCGTCGTAGGATTAGTGGGAAAACTTTGCACCG 650
consensus_6897#1 ------------------------------------------------------------
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 CAAATGCGGCCACCACCGTCCACTACCAGCGACATGCTGCACCACCAGCCAAATCGACGG 710
consensus_6897#1 ------------------------------------------------------------
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 CCACGCCCGCCCAACAGTACTTTGATGCCGTTGCACCGGAAGATCGAGAAAACTTCATCA 770
consensus_6897#1 ------------------------------------------------------------
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 AATACCATCTGGACAGGGCACTGGANGAGCGTTTACCCCGCCACACGAGCAGCATACCGA 830
consensus_6897#1 ------------------------------------------------------------
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 AGGACTTTGAGTTCGTTGCCTTCCAGGACGCGGNCGAGCCGGAACATTTTTCCCTCAACC 890
consensus_6897#1 ------------------------------------------------------------
consensus_6897#2 ------------------------------------------------------------
consensus_6897#0 TGNTGGACCACTTTATGATCGCTTACGGTCT 921
consensus_6897#1 -------------------------------
consensus_6897#2 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||