These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 598 fasta sequence [CCGCGGACGCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT-AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA-TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA] [+] EMBL BM604747 [CCGCGGACGCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCT ] [-] EMBL AGA283936 [ TTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT AAAAATGTCATAGCATACATTAC AAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCATACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA] [-] EMBL CNS096OU [ TCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTATTTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACT ] [+] EMBL BM638916 [ GTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAAAATGTCATAGCATACATTAC AAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCT ] consensusID : consensus_6899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence [TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGCATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTTTGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATGTCA] [-] EMBL CNS0909N [TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGCATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTTTGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATGTCA] [-] EMBL CNS090X3 [ aaAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6899#0 ------------------------------------------------------------ consensus_6899#1 TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGC 60 consensus_6899#0 ------------------------------------------------------------ consensus_6899#1 ATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTT 120 consensus_6899#0 ----------------------------------------------------CCGCGGAC 8 consensus_6899#1 TGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACC 180 * consensus_6899#0 GCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAA 68 consensus_6899#1 GATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAA 240 * ** ** *************************** ********************** consensus_6899#0 AGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTG 128 consensus_6899#1 AGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTG 300 ****************************** ***************************** consensus_6899#0 TATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCT-- 186 consensus_6899#1 TATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCT 360 ************************************************* ******** consensus_6899#0 ------ATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT 240 consensus_6899#1 CTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT 420 ****************************************************** consensus_6899#0 TATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC 300 consensus_6899#1 TATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC 480 *********** *********************************************** consensus_6899#0 TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTG 360 consensus_6899#1 TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTG 540 ******************************************** *************** consensus_6899#0 TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAAATGTCATAGCATACATT 420 consensus_6899#1 TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAA-TGTCA----------- 588 ******************************************* ***** consensus_6899#0 ACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTATTTCG 480 consensus_6899#1 ------------------------------------------------------------ consensus_6899#0 TTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGC 540 consensus_6899#1 ------------------------------------------------------------ consensus_6899#0 TATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA 598 consensus_6899#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||