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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 913 fasta sequence
[CCGGCGGCCG-GGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC-AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCAC]
[+] EMBL BM612841 [CCGGCGGCCGAGGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTT ]
[+] EMBL BM637596 [ CCG GGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTC ]
[+] EMBL BX607824 [ ACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCGCGCATCATCACTCTCGGCCTTAGCGCCACTACCAACAGTCAAGTCAGTTCGTCACGATGAGTGTAACAAGCTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATATCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCTTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCAC]
[+] EMBL BX603784 [ AAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTC ]
[+] EMBL BX606918 [ cgAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAG ]
consensusID : consensus_6902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CAAGAATCGGCCCGAGGTATTACCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAACACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAAATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAGTCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAGCGTGATCTATT]
[+] EMBL BX468640 [CAAGAATCGGCCCGAGGTATTACCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAACACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAAATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAGTCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAGCGTGATCTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6902#0 CCGGCGGCCGGGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAA 60
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 TAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGT 120
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 TGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTG 180
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 GTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAAT 240
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 CAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTCAGTCAGTTCGTC 300
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 ACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCA 360
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 TGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAA 420
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 CAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCG 480
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 GTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAA 540
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 GACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAA 600
consensus_6902#1 ------------------------------------------------------------
consensus_6902#0 CCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTA 660
consensus_6902#1 --------------------------------------CAAGAATCGGCCCGAGGTATTA 22
** ** * *******
consensus_6902#0 CCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTG 720
consensus_6902#1 CCC-GACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTG 81
*** ********************************************************
consensus_6902#0 CACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCG 780
consensus_6902#1 CACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCG 141
************************************************************
consensus_6902#0 CAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAAC 840
consensus_6902#1 CAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAAC 201
************************************************************
consensus_6902#0 AGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATC 900
consensus_6902#1 AGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATC 261
************************************************************
consensus_6902#0 CAGGATAAAGCAC----------------------------------------------- 913
consensus_6902#1 CAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAAC 321
*************
consensus_6902#0 ------------------------------------------------------------
consensus_6902#1 ACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAA 381
consensus_6902#0 ------------------------------------------------------------
consensus_6902#1 ATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAG 441
consensus_6902#0 ------------------------------------------------------------
consensus_6902#1 TCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAG 501
consensus_6902#0 -----------
consensus_6902#1 CGTGATCTATT 512
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||