These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT] [+] EMBL BM657603 [CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTG ] [+] EMBL BM584287 [ ccggtCGCTTCGGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCA GAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAAGCGAAGAAGGCTAAGCAGGCGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAAGAAGGCTAAGAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCAGGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT] consensusID : consensus_6904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC] [+] EMBL BM630054 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC] consensusID : consensus_6904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [ACCAGAGCAACTGCACCCGTTCAG-TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT-AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA-TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BM602098 [ACCAGAGCAACTGCACCCGTTCAG TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG] [+] EMBL CNS08W9X [ CTGCACCCGTTCAGTTGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACTCCTAAAAAAAATGCACTCTCTCGCTCTCTCGTTCTCTCACACTGTTTACGCGACTAAACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGAAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATAATTTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACTGATCGGCAAACG ] consensusID : consensus_6904#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA] [+] EMBL AL931129 [GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6904#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAAC 60 consensus_6904#3 ------------------------------------------------------------ consensus_6904#2 -------------------------------ACCAGAGCAACTGCACCCGTTCAGTGTGT 29 consensus_6904#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGC-TGC 59 consensus_6904#1 CCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTA 120 consensus_6904#3 --------------------------GCAAGAATCGCCCCGAG-GCGAAAGGTGCGATAA 33 consensus_6904#2 ATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAA 89 consensus_6904#0 CCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTA--ATTCGGTTTT 117 * * * consensus_6904#1 TTCCTTCGACT--CTTCGTCTTCTTCTGCCTTCACTTCT-ACGTCTTATTCTTCTTCTCG 177 consensus_6904#3 AACAGTCAACTAATTTCAGTATTGTTTGTCT-CAAAGGT-ACGTGGTGCG-------TTG 84 consensus_6904#2 ATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTAC-GCGACTAACTTAAACTTACG 148 consensus_6904#0 ATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAG 177 * * * * * consensus_6904#1 CCACCGAGCTGCAACTGCACTTCTGC--AAAGAGCAAACTTTATGATACGACTGTGTGTG 235 consensus_6904#3 CAGGCAGGTTTCG-CTTCACC-CAGC--GAA--ACAAAAACTGGAGTGTGTTTGCTCATG 138 consensus_6904#2 CTCACGGCACACGCGCTTAAAGGCGC--GAGCAATTTCGGTTGCCCCGTGTTTGCACACA 206 consensus_6904#0 CGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAG 237 * * * ** * * consensus_6904#1 TATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCAT--TGCAAA-GTATCCG 292 consensus_6904#3 TGATCCAGTGGC-AGAGGAACACAATGACGACATAGCCCGTTGT--AACTGATGTAATTG 195 consensus_6904#2 C---TCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTC--CATTTCGATTATTT 261 consensus_6904#0 GCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTC 297 * * * * consensus_6904#1 CCACCTACCATAGCGTTCGGCTTGATCAGGCCAAC---CACCCCAGAGACAGCC-GTCTG 348 consensus_6904#3 ATATCGATTTTTG-GCTGTCCGTGTTCAGTTT------CACACGGGGGATTGTTTGCATG 248 consensus_6904#2 CCTCCTTGTGCACCACCTGCTGCGTGACGACC------TGTGCCGTTTGCTGCT--GCTG 313 consensus_6904#0 TTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGT 357 * * consensus_6904#1 CCATGCCTGCTCTTGCAG-GACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATT 407 consensus_6904#3 TGACGAATGCTTATGCGA-GGC-GAGCCG--CTGGATT--ACGGACACG---TGTAAATC 299 consensus_6904#2 CTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATG-CCACGATGCC 372 consensus_6904#0 AGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGT 417 * * * * * * * * * consensus_6904#1 CGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCT 467 consensus_6904#3 TCCTCTAGTCACG-TTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTC 358 consensus_6904#2 TCTTCAGCGCGAA---CCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTT 429 consensus_6904#0 AACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAG 477 * consensus_6904#1 TCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGT-GCATCTGT-TAACACTTTAGTG 525 consensus_6904#3 ACATCGAACCAATCACGGAGNAGGCCAAACATCGTCC-CCGAAAGT-TGCTACA------ 410 consensus_6904#2 TTAA-GCCGGAGTGCACCTTTTCGTGATTCTTGAGAT-GCGCAGCC-TGACTGAACCCAC 486 consensus_6904#0 ATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGT 537 * * * * * consensus_6904#1 TCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGT 585 consensus_6904#3 ------------------------------------------------------------ consensus_6904#2 GCGTCCGCCCACGC-GTCCGCCCACGCGTCCGCGG------------------------- 520 consensus_6904#0 TTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACA 597 consensus_6904#1 CCGTTC------------------------------------ 591 consensus_6904#3 ------------------------------------------ consensus_6904#2 ------------------------------------------ consensus_6904#0 TAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT 639 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||