|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1270 fasta sequence
[CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCAGACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGCGACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGAGGAAGCGATGGCGATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGTGGCGAAGTGGCGGTGTTTGATGCTACAAATTCTACCCGCGACCGGCGTCAGATGATACGCGAAATTGTGGTAAAAAAGATGGGCTACAAGCTCTTTTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAACGAAATCGATGCGGGCATTTGCGAGGAAATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAAGTGCCTCTCCCACGATCATCAAGCTGACGCCGG]
[+] EMBL BM583637 [CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCAGACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGCGACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGAGGAAGCGATGGCGATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGTGGCGAAGTGGCGGTGTTTGATGCTACAAATTCTACCCGCGACCGGCGTCAGATGATACGCGAAATTGTGGTAAAAAAGATGGGCTACAAGCTCTTTTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGGACACATACAGTCGCGCAT ]
[+] EMBL BX628079 [ TTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGA GGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAACGAAATCGATGCGGGCATTTGCGAGGAAATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAAGTGCCTCTCCCACGATCATCAAGCTGACGCCGG]
[+] EMBL BM653480 [ ACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAATGAAATCGATGCGGGCATTTGCGAGGAAATGACTTACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATACTTT ]
consensusID : consensus_6914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence
[TGATTTAGTAGCGTGTGTGTGTGAGTGTGTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCTCTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATG--TTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGAGCGCGAGGCGGTAAATTCTCAACAATGCATAAACGTATCGCTTCGTTACAAGCAATACAATCAGTACGCCATTTTACATATTCAGCCCCCCACCCCCCCCTACCCTTCTCCAGCCAGTAATCATTATCGCAACATCAAACTTAGGGGGCGGGGGGCAGATAGGGAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGTGTTGTGTTTCCAACGCTTTTCCAAACCACACGCGGGGAAAACAGCCGCCCGGCAAAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACGCACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAGCAAGACAGTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTGTGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACACAAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATACCAATTCGC]
[-] EMBL CNS08SCK [TGATTTAGTAGCGTGTGTGTGTGAGTGTGTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCTCTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATG TTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGAGCGCGAGGCGGTAAATTCTCAACAATGCATA ]
[+] EMBL BX616378 [ GTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATGTTTTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGA CGCGAGGCGGTAAATTCTCAGCAATGCATAAACGTATCGCTTCGTTACAAGCAATACAATCAGTACGCCATTTTACATATTCAGCCCCCCACCCCCCCCTACCCTTCTCCAGCCAGTAATCATTATCGCAACATCAAACTTAGGGGGCGGGGGGCAGATAGGGAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGTGTTGTGTTTCCAACGCTTTTCCAAACCACACGCGGGGAAAACAGCCGCCCGGCAAAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACGCACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAGCAAGACAGTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTGTGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACACAAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATACCAATTCGC]
consensusID : consensus_6914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTTACAACGTCATCGTGAAGGGTCTCGCCGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGAACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAG]
[+] EMBL BM579846 [CCGCCCACGCGTCCGCCCACGCGTCCGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTTACAACGTCATCGTGAAGGGTCTCGCCGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGAACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6914#0 CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCA 60
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 GACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGAT 120
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 TGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTA 180
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 CCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGC 240
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 --------------------------------------TGATTTAGTAGCGTGTGTGTGT 22
consensus_6914#0 GACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGA--GGAAGCGATGGCG 298
consensus_6914#2 ------------CCGC--CCACGCGTCCGCCCACGCGTCCGCTGG--G------ATCGCT 38
consensus_6914#1 GAGTGT--GTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCT 80
* ** * ** * * *
consensus_6914#0 ATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGT 358
consensus_6914#2 GTTCGGCTG---TGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTT--ACAAC 93
consensus_6914#1 CTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCT 140
* * * * ** * * *
consensus_6914#0 GGCGAAGT-GGCGGTGTT------TGATGCTACAAATTCTACCCGCGACCGGCGTCAGAT 411
consensus_6914#2 GTCATCGT-GAAGGGTCT------CGCCGGCA-AGCCGATGACCAACAACGGTGCCC--T 143
consensus_6914#1 CGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATGTTGCTGTTGTGTAGTAGTGTGGGAA 200
** * ** * * * * * * * *
consensus_6914#0 GATACGCGAAATTGTGG-TAAAAAAGATGG-GCTACAAGCTCTTTTTCG-TCGAGTCGGT 468
consensus_6914#2 GCTGCGC---ATTCTGG-GCGTGTGGGTG----TTCGCGCTGTTCTGGACTCTGGCCCCG 195
consensus_6914#1 GCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCC 260
* * ** * * * * * * ** * * * *
consensus_6914#0 CTGTGAC-GATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCG 527
consensus_6914#2 CTGTTCG-GATGGAACCGATACGTGCCGGAGGGCAACA----TGACCGCCTGCGGAACCG 250
consensus_6914#1 TCGAGCGCGAGGCGGTAAATTCTCAACAATGCATAAACGTATCGCTTCGTTACAAGCAAT 320
* ** * * *
consensus_6914#0 ACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACT 587
consensus_6914#2 ACTACCTGA-CCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCAT-----CT 304
consensus_6914#1 ACAATCAGTACGCCATTTTACATATTCAGCCCCC-CACCCCCCCCTACC---------CT 370
** * * * * * * * * * ** * **
consensus_6914#0 ACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGA 647
consensus_6914#2 TCGTGTACTGGCTGCCGCTGCTGA-CCATCATCT--ACTCGTACACCTTCATCCTGAAGG 361
consensus_6914#1 TCTCCAGCCAGTAATCATTATCG---CAACATCAAACTTAGGGGGCGGGGGGCAGATAGG 427
* * * * * * * * **
consensus_6914#0 TCTACAACACGGGCGAAAAGGTGGTG-GTGCACAAGCA-CGAGGGGACACATACAGTCGC 705
consensus_6914#2 CTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGC--CAAGAAGATGAACGTCGCCTC 419
consensus_6914#1 GAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGT 487
* * * * * ** * * ** *
consensus_6914#0 GCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGAC 765
consensus_6914#2 GCTGCGTACGC-------AGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGG 472
consensus_6914#1 GTTGTGTTTCC-----AACGCTTTTCCAAACCACACGCGGGGAAA-ACAGCCGCCCGGCA 541
* ** * * ** * ** * * * * **
consensus_6914#0 ACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAAC 825
consensus_6914#2 TCGCCCTGGTCAC---CATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTG-GTCATC 528
consensus_6914#1 AAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACG 601
* * * ** * *
consensus_6914#0 GGGGCCGCCGCTACGCG-CAGGCACTT-GCCAAGTACATCGACGA-GCAGCAGATCGAAG 882
consensus_6914#2 AACTTCACCGGAATCTT-CAAGGCTGC-CCCGATCAGCCCGCTGG-CCACCA--TCTGGG 583
consensus_6914#1 CACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAG 661
* * * * * ** * * * *
consensus_6914#0 GACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAA---TACAAACCG-TCGCCGATGTG 938
consensus_6914#2 GCTCGC-----TGTTCGCCAAGGCCAACGCCGTC-----TACAACCCGATCGTGTACGGC 633
consensus_6914#1 CAAGACA-GTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTG 720
* * ** * * *** * * * * * *
consensus_6914#0 AACGCACCGCAGGAACGCTGGAAGGCGCT-GAACGAAATCGATGCGGGCATTTGCGAGGA 997
consensus_6914#2 ATCAGCCATCCGAAGTATCGCGCTGCCCT-GTACCAG----------------------- 669
consensus_6914#1 TGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACAC 780
* * * * *
consensus_6914#0 AATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAA 1057
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 AAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATA 840
consensus_6914#0 CAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGA 1117
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 CCAATTCGC--------------------------------------------------- 849
consensus_6914#0 ACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGT 1177
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 GCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAA 1237
consensus_6914#2 ------------------------------------------------------------
consensus_6914#1 ------------------------------------------------------------
consensus_6914#0 GTGCCTCTCCCACGATCATCAAGCTGACGCCGG 1270
consensus_6914#2 ---------------------------------
consensus_6914#1 ---------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||