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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence
[CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAAATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATGTACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTGTGTGCAGTGAACGAGCTGCGCGAGCGGCTGGTAACGTTGCTCCAACGGTACATCCTGCACACGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGACACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTATTCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAGGAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTATATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCTTCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA]
[+] EMBL BM578729 [CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGA ]
[+] EMBL BX607418 [ GAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAAATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATGTACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTGTGTGCAGTGAACGAGCTGCGCGAGCGGCTGGTAACGTTGCTCCAACGGTACATCCTGCACACGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGACACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTATTCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAGGAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTATATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCTTCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA]
consensusID : consensus_6922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACAAACCACAGCCAAGATTGTTGAAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCTGCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAAAAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATCCGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTTCCAGAAGATTGCCAAGCGGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGGTCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGGAGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGTTCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGCCGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTGAAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG]
[+] EMBL CNS09E2U [TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACAAACCACAGCCAAGATTGTTGAAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCTGCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAAAAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATCCGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTTCCAGAAGATTGCCAAGCGGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGGTCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGGAGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGTTCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGCCGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTGAAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG]
consensusID : consensus_6922#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGTGTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAAAACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGAGTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGGGTCGCGTTCTGGAGCGTGTTGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCGCATAAAGTGTGCGTGCCGCGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAAGCCACCCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCACAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAGCGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAAAACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT]
[+] EMBL BM606155 [CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGTGTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAAAACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGAGTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGGGTCGCGTTCTGGAGCGTGTTGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCGCATAAAGTGTGCGTGCCGCGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAAGCCACCCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCACAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAGCGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAAAACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT]
consensusID : consensus_6922#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAGCCAGCCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTGCCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACCAGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACCATCAGGGCGTCAGCTGCGAGGGCGACCTGAAGGAATCGTCCGACAGCTCCAACACCCCGCTCGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAGCCAAAATCGAACAAAGCCGACTCGGACTCCCTGCGCCAGCTCGCGTGCCTGAACGGGCTGAGCGAACTGCTCGTCACGTCAACCGATCGCATCCCGACCGTGCACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC]
[+] EMBL BX608540 [GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAGCCAGCCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTGCCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACCAGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACCATCAGGGCGTCAGCTGCGAGGGCGACCTGAAGGAATCGTCCGACAGCTCCAACACCCCGCTCGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAGCCAAAATCGAACAAAGCCGACTCGGACTCCCTGCGCCAGCTCGCGTGCCTGAACGGGCTGAGCGAACTGCTCGTCACGTCAACCGATCGCATCCCGACCGTGCACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC]
consensusID : consensus_6922#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence
[CCGCCCACGCGTCCGAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTT]
[+] EMBL BM650275 [CCGCCCACGCGTCCGAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6922#3 ------------------GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAG 42
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 -CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCA 59
consensus_6922#2 CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGT 60
consensus_6922#1 ------------------------------------------------------------
consensus_6922#3 CCAG-CCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTG 101
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 GTC--CTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTG 117
consensus_6922#2 GTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAA 120
consensus_6922#1 -TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACA 59
consensus_6922#3 CCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACC 161
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 TACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATT-ATGGCAGAAGAAAACAAA 176
consensus_6922#2 AACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGA 180
consensus_6922#1 AACCACAGCCAAGATTGTTG-AAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCT 118
consensus_6922#3 AGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACC 221
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 AATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCT 236
consensus_6922#2 GTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGG 240
consensus_6922#1 GCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAA 178
consensus_6922#3 ATCAGGGCGTCAGCTGCGAGGGCGACCTGAA--------GGAATCGTCCGACAGCTCCAA 273
consensus_6922#4 -------------CCGCCCACGCGTCCGAAA--------AAAA----CCCAGATTGGCAG 35
consensus_6922#0 GCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAA 296
consensus_6922#2 GTCGCGTTCTGGAGCGTGT-TGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCG 299
consensus_6922#1 AAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATC 238
consensus_6922#3 CACCCCGCT--CGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAG 331
consensus_6922#4 GAGGCAACC--C-------CCCAACCA-ACAGC-AGGAGGCAACAGCAAAGCAACCAAAA 84
consensus_6922#0 ATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATG 356
consensus_6922#2 CATAAAGTGTGCGTGCCG-CGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAA 358
consensus_6922#1 CGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTT--CCAGAAGATTGCCAAGC 296
* * *
consensus_6922#3 CCAAA--ATCGAACAAA-GCCGACTCGGAC--TCCCTGCGCCAGCTCG-CGTGCC----- 380
consensus_6922#4 CCCGA--ACCTACCGCT-AACTAGTAGAACAATTACAGCACCAGACTG-GGTAA------ 134
consensus_6922#0 TACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTG-TGTGCAG---- 411
consensus_6922#2 GCCAC--CCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCA---- 412
consensus_6922#1 GGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGG 356
* * *
consensus_6922#3 -TGAACGGGCTGAGCGAACTGCTCGT-----CACGTCAACCGATCGCATCCCGACCGTGC 434
consensus_6922#4 -TAAATTGATTG-GTAAAACGTTACT-----ATAGTT----------------------- 164
consensus_6922#0 -TGAACGAGCTGCGCGAGCGGCTGGT-----AACGTTGCTCCAACGGTACATCCTGCACA 465
consensus_6922#2 -CAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAG 471
consensus_6922#1 TCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGG 416
*
consensus_6922#3 ACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC------------- 481
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 CGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGAC 525
consensus_6922#2 CGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAA 531
consensus_6922#1 AGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGT 476
consensus_6922#3 ------------------------------------------------------------
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 ACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTAT 585
consensus_6922#2 AACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT---- 587
consensus_6922#1 TCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGC 536
consensus_6922#3 ------------------------------------------------------------
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 TCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAG 645
consensus_6922#2 ------------------------------------------------------------
consensus_6922#1 CGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTG 596
consensus_6922#3 ------------------------------------------------------------
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 GAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTAT 705
consensus_6922#2 ------------------------------------------------------------
consensus_6922#1 AAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG------------------------ 632
consensus_6922#3 ------------------------------------------------------------
consensus_6922#4 ------------------------------------------------------------
consensus_6922#0 ATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCT 765
consensus_6922#2 ------------------------------------------------------------
consensus_6922#1 ------------------------------------------------------------
consensus_6922#3 --------------------------------------
consensus_6922#4 --------------------------------------
consensus_6922#0 TCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA 803
consensus_6922#2 --------------------------------------
consensus_6922#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||