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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1279 fasta sequence
[TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCAATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGATGATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAATACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTGACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACATAATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTGCATCGCTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTTCGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATTAGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGTTGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGATCGATATAATTGCACCACCGGCGCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTCCTTCACCGGCTCACCGATGGTTCCCGAGCCACCGATCAGCAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG]
[+] EMBL AGA283539 [TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCAATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGATGATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAATACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTGACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACATAATGTTCCAATATACGAAGAAA ]
[+] EMBL AGA284292 [TTTTTTTTGGTTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACC ]
[-] EMBL BX621747 [ GTTTATTTGGAACGCCTGCATAATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTGCATCGCTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTTCGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATTAGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGTTGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGATCGATATAATTGCACCACCGGCGCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTCCTTCACCGGCTCACCGATGGTTCCCGAGCCACCGATCAGCAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG]
[-] EMBL BM580523 [ CTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGCGCCGAGCCCAGGTTAGCTCCGGGGGCGGTGGTAGCG GCAGCAGCTACAAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCcgg ]
consensusID : consensus_6923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence
[ANTCTCGGGCCCAAGTCTTTGGGCNNAGCCTTGTTCNTTCGTTANTNCGTCCGAANCGAATTTCCAGTTGGGCCTGGTTCCCGGCCGGATTCTTCGGGCCCGTGCTAGAAAAGTCCCTCCCGAAATCGTCAGTNCACCGATTCCGAATATAATTGCACCACCGGCCGCCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCCCGATGATGGCACCCCTTCAGCAAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTTCCTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCGTCGTCGTTTTCCGTCAGATCGGTGAGCTTCGAGTCGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCTGCCGGTTTCTCGTGCACCAGATGGAACCCGATCGTGCGGTCGGAGGGTGATTTCGATTTGGATGAAACCAAAGCGCCACCGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAGACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGCTCGCTGCATCAAGGGCGAATGTTTCGAGAGCAGCTCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTATGCCGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTAGTAAATGCATCCGGATGTCGCCTCGTGCCGATTCTG]
[-] EMBL BX467735 [ANTCTCGGGCCCAAGTCTTTGGGCNNAGCCTTGTTCNTTCGTTANTNCGTCCGAANCGAATTTCCAGTTGGGCCTGGTTCCCGGCCGGATTCTTCGGGCCCGTGCTAGAAAAGTCCCTCCCGAAATCGTCAGTNCACCGATTCCGAATATAATTGCACCACCGGCCGCCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCCCGATGATGGCACCCCTTCAGCAAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTTCCTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCGTCGTCGTTTTCCGTCAGATCGGTGAGCTTCGAGTCGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCTGCCGGTTTCTCGTGCACCAGATGGAACCCGATCGTGCGGTCGGAGGGTGATTTCGATTTGGATGAAACCAAAGCGCCACCGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAGACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGCTCGCTGCATCAAGGGCGAATGTTTCGAGAGCAGCTCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTATGCCGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTAGTAAATGCATCCGGATGTCGCCTCGTGCCGATTCTG]
consensusID : consensus_6923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[AAGACCATATCACTGATCGACGCACTGAACGGGCCGACGGTTTCAATGAAAGCGATCAACGGCAGCACCGACTCAACCGCTGGCACCGAAAATGGTAGCGAGAATAATCGGAGCACCGAGAATGGTTTCGGATTCCGCAACAAAATGACCAAGTCATCCACCGATCACAGCAGCAACGGTGAGCTCGCCAACGGAAGCATCGTTTCGGAAAAGTCGTCCTCCGACATCCGGATGCATTTACTAGCTTCCGATGAAACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAACGTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCTGCTCTCGAAACATTCGCCCCTGATGCAGCGAGCACCGGTCAGCAAGGACAAGAACCCGCGCGAAAAGGG]
[+] EMBL AGA284829 [AAGACCATATCACTGATCGACGCACTGAACGGGCCGACGGTTTCAATGAAAGCGATCAACGGCAGCACCGACTCAACCGCTGGCACCGAAAATGGTAGCGAGAATAATCGGAGCACCGAGAATGGTTTCGGATTCCGCAACAAAATGACCAAGTCATCCACCGATCACAGCAGCAACGGTGAGCTCGCCAACGGAAGCATCGTTTCGGAAAAGTCGTCCTCCGACATCCGGATGCATTTACTAGCTTCCGATGAAACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAACGTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCTGCTCTCGAAACATTCGCCCCTGATGCAGCGAGCACCGGTCAGCAAGGACAAGAACCCGCGCGAAAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6923#0 TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATT 60
consensus_6923#1 ------------------------------------------------------------
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 TACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAA 120
consensus_6923#1 ------------------------------------------------------------
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 AATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCA 180
consensus_6923#1 ------------------------------------------------------------
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 ATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGAT 240
consensus_6923#1 ------------------------------------------------------------
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 GATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAAT 300
consensus_6923#1 ------------------------------------------------------------
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 ACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGA 360
consensus_6923#1 -----------------------------------------------ANTCTCGGGCCCA 13
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 AGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTG 420
consensus_6923#1 AGTCTTTG--GGCNNAGCCT-TGTTCNTTCGTTANTNCGTCCGAANCGAAT-TTCCAGTT 69
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 ACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACAT 480
consensus_6923#1 GGGCCTGGTTCCCGG----CCGGATTCTTCGG---GCCCGTGCTAGAAAAGTCCCTCCCG 122
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 AATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTG------CATCG 534
consensus_6923#1 AAATCGTCAGTNCACCGA--------TTCCGAATATAATTGCACCACCGGCCGCCCCCTG 174
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 CTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTT 594
consensus_6923#1 TTCCCTCCGACCAGTCCCA-TCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCC 233
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 CGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGT 654
consensus_6923#1 CGATG----ATGGCACCCCTTCAGCA---AGCTCCGTTATCACAG--CGGAGGGCGATGT 284
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 GTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCT 714
consensus_6923#1 TTTTTTC--CTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGA-GCTTCTTC 341
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 GTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGA 774
consensus_6923#1 ATCGCCATGTCTCCGAGCTTGC-TGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTG- 399
consensus_6923#2 -------------------------AAGACCATATCACTGATCGACGCACTGAACGGGC- 34
*** ** * *
consensus_6923#0 TCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATT 834
consensus_6923#1 -----GGGAAAGCTTTTCCGCCT-CACTGTCGTCGTCGTTTTCCGT-CAGATC---GGTG 449
consensus_6923#2 ------CGACGG--TTTCAATGAAAGCGATCAACGGCAGCACCGAC-TCAACC----GCT 81
** *** * * * * * *
consensus_6923#0 AGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATC 894
consensus_6923#1 AGCTTCGAGT-CGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCT-----GCCGGTTTC 503
consensus_6923#2 GGCACCGAAA---ATGGTAGCGAGAATAATCGGAGCACCGAGAATGGT---TTCGGATTC 135
** ** * * * ** * * * * **
consensus_6923#0 TATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGT 954
consensus_6923#1 T-CGTGCACCAGATGGAAC--CCGATCGT-GCGGTCGGAGGGTGATTTCGAT---TTGGA 556
consensus_6923#2 C----GCAACAAAATGACCAAGTCATCCA-CCGATCACAG--CAGCAACGGTGAGCTCGC 188
** * * ** ** * * * * *
consensus_6923#0 TGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGAT-CGATATA- 1012
consensus_6923#1 TGAAACCAAAGCGCCAC---CGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAG 613
consensus_6923#2 CAACG--GAAGCATCGTTT-CGGAAAAGTCGTCC--TCCGACA-TCCGGAT---GCATTT 239
* * * * * * * * ** * ***
consensus_6923#0 ATTGCACCACCGGCGC----CCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCC 1068
consensus_6923#1 ACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGC--TCGCTGCATCAAGGGC 671
consensus_6923#2 ACTA-GCTTCCGATGA----AACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAAC 294
* * * * * * * * * * * * *
consensus_6923#0 CTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGC 1128
consensus_6923#1 GAATGTTTCGAGAGCAGC-TCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTAT----GC 726
consensus_6923#2 GTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCT--GCTCTCGAAAC 352
* * * * * * * * * *
consensus_6923#0 GGAGGGCGATGTTTTTTCCTTCACCGGC-TCACCGATGGTTCCCGAGCCACCGATCAGCA 1187
consensus_6923#1 CGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTA 786
consensus_6923#2 ATTCGCCCCTGATGCAGCGAGCACCGG--TCAGCAAGGACAAGAACCCGCGCGAAAAGGG 410
* * * * * ***** ** * * * **
consensus_6923#0 GCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCA 1247
consensus_6923#1 GTAAATGCATCCGGATGTCGCC--TCGTGCCGATTCTG---------------------- 822
consensus_6923#2 ------------------------------------------------------------
consensus_6923#0 GCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG 1279
consensus_6923#1 --------------------------------
consensus_6923#2 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||