These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1184 fasta sequence [AAGAATCGCCACGAGGTAACTCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA-CGATTCGCTCAAAATGATACGAGATACAAGGTGGGA-GGAACGCAAAATCACACACACACACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGGTTGGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAAAAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTAGAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAATGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAACAGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATATTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA] [+] EMBL BX467241 [AAGAATCGCCACGAGGTAACTCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTNAGGACCGATTCGCTCAAAATGATACGAGATACAAGGTGGGACGGAACGCANAATCACACACACACA ] [+] EMBL BX625935 [ tGGCCGTTTCAAGTCTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGGGAGCTGAACAAACTAATCTTCCGATAAGCTCACCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA CGATTCGCTCAAAATGATACGAGACAC TGGTGGGA GGAACGCAAAAT CACACACACACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGGTTGGATGGTTTGAGGAATAT ] [+] EMBL BX616805 [ GTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA CGATTCGCTCAAAATGATACGAGATACAAGGTGGGA GGAACGCAAAATCACACACACACACACCGGGATACGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGGACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGG CAGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAAAAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTAGAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAATGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAACAGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATATTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA] consensusID : consensus_6929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAA-CCAACCGAACGG-CGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAA-CTCTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCG-TC-AAATGATACGAGATACTGGTGGGAGGAACGCAAAATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA] [+] EMBL AL696856 [ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAA CCAACCGAACGG CGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAA CTCTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCG TC AAATGATACGAGATACTGGTGGGAGGAAC ] [+] EMBL BM646822 [ ccGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCCATGACCAACCCAATCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAA AGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACC TTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCGCTCAAAATGATACGAGATACTGGTGGGAGGAACGCAAAATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA] consensusID : consensus_6929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GCAGAATCCGCACGANNGTATGAAGACTTCATCGTGTACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAATCAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCGACAGGCACCAGAACCGGCTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGNCAGCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGNTGTACGACGTGGATGTCGCTATGAGCAAGCCGAAGCGAAACGGCGTTTCAAGTGTAACAAAGCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGTGAAAACCGNCTCGAACGGTAGGACCCGGAT] [+] EMBL BX467799 [GCAGAATCCGCACGANNGTATGAAGACTTCATCGTGTACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAATCAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCGACAGGCACCAGAACCGGCTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGNCAGCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGNTGTACGACGTGGATGTCGCTATGAGCAAGCCGAAGCGAAACGGCGTTTCAAGTGTAACAAAGCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGTGAAAACCGNCTCGAACGGTAGGACCCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6929#0 -----------------------------------------------------AAGAATC 7 consensus_6929#1 ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTA 60 consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 GCCACGAGGTAACTCC-GGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGT 66 consensus_6929#1 TCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGT 120 consensus_6929#2 ---------------------GCAGAATCCGCACGANNGTATGAAGACTTCATCGT--GT 37 ** ** * * ***** * * * ** consensus_6929#0 GTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAA 126 consensus_6929#1 GTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAA 180 consensus_6929#2 ACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAAT 97 ***** * * * * * * * * *** * * * ** * ** * consensus_6929#0 GAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGA 186 consensus_6929#1 GAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAACC-AACCGA 239 consensus_6929#2 CAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCG-----ACAGGCACCAGAACCGG 152 ** * ** * ***** * * ** *** *** * * ** * ***** consensus_6929#0 ACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTT 246 consensus_6929#1 ACGGC-GTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTT 298 consensus_6929#2 -CTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACAT 211 * ** * ** ** ** * * * ** ** * **** * ** * * consensus_6929#0 CGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATG 306 consensus_6929#1 CGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATG 358 consensus_6929#2 CGGTGCGATCAACGA-GTATCTCTATCCCAGCTC-----CCGGCTGCGCGTCAACAACCA 265 ** * *** *** * ***** **** ** * * ** ** consensus_6929#0 TAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATA 366 consensus_6929#1 TAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATA 418 consensus_6929#2 -GTTTCTGAAGTACGCCTGGAAAGT--GTCCAGCGACGTGTCGC-GCTTTTCCATCGNCA 321 ** **** * * * * ** ** * ** * * * consensus_6929#0 CGTGACGGATGTGGGTCGC--GAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCT 424 consensus_6929#1 CGTGACGGATGTGGGTCGC--GAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAAC-T 475 consensus_6929#2 GCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGN------- 374 * * **** * * *** * * * ** ****** ** ** consensus_6929#0 CTGTGCACCAACGGTGCCTAAGAAAA-GGAACAGGATGAGGGGCCGCGGTGATATATTTG 483 consensus_6929#1 CTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTG 535 consensus_6929#2 -TGTACGACGTGGATGTC---GCTAT--GAGCAAGCCGAAGCGAAACGGCGTTTCAAGTG 428 *** * * * ** * * * ** ** * ** * * *** * * * ** consensus_6929#0 TACCTTT-CCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGAC-TGTTAGG 541 consensus_6929#1 TACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGAC-TGTTAGG 594 consensus_6929#2 TAACAAA--GCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGT 486 ** * * ** * ** ** ** * *** ** * * * * consensus_6929#0 ACGATTCGCTCAAAATGATACGAGATACAAGGTGGGAGGAACGCAAAATCACACACACAC 601 consensus_6929#1 ACGATTCGTC--AAATGATACGAGATACT-GGTGGGAGGAACGCAAAATCACACACACAC 651 consensus_6929#2 GAAAACCGNCTCGAACGGTAGGACCCGGAT------------------------------ 516 * ** ** * ** ** consensus_6929#0 ACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCA-ATA 660 consensus_6929#1 ACACACACACACA-----CACACACACACACACACACACACACACACACACACACACACA 706 consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 TTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAA 720 consensus_6929#1 CACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA----------------------- 743 consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 GCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCC 780 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 TTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGAT 840 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 ACAGGTTGGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAA 900 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 AAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTA 960 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 GAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAA 1020 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 TGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAAC 1080 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 AGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATA 1140 consensus_6929#1 ------------------------------------------------------------ consensus_6929#2 ------------------------------------------------------------ consensus_6929#0 TTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA 1184 consensus_6929#1 -------------------------------------------- consensus_6929#2 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||