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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1184 fasta sequence
[AAGAATCGCCACGAGGTAACTCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA-CGATTCGCTCAAAATGATACGAGATACAAGGTGGGA-GGAACGCAAAATCACACACACACACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGGTTGGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAAAAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTAGAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAATGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAACAGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATATTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA]
[+] EMBL BX467241 [AAGAATCGCCACGAGGTAACTCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTNAGGACCGATTCGCTCAAAATGATACGAGATACAAGGTGGGACGGAACGCANAATCACACACACACA ]
[+] EMBL BX625935 [ tGGCCGTTTCAAGTCTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGGGAGCTGAACAAACTAATCTTCCGATAAGCTCACCAACCTCTGTGCACCAACGGTGCCTAAGAAAAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA CGATTCGCTCAAAATGATACGAGACAC TGGTGGGA GGAACGCAAAAT CACACACACACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGGTTGGATGGTTTGAGGAATAT ]
[+] EMBL BX616805 [ GTACCTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGA CGATTCGCTCAAAATGATACGAGATACAAGGTGGGA GGAACGCAAAATCACACACACACACACCGGGATACGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCAATATTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGGACGTTTCTTTACATAAGCCATAAGCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCCTTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGATACAGG CAGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAAAAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTAGAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAATGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAACAGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATATTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA]
consensusID : consensus_6929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence
[ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAA-CCAACCGAACGG-CGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAA-CTCTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCG-TC-AAATGATACGAGATACTGGTGGGAGGAACGCAAAATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA]
[+] EMBL AL696856 [ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAA CCAACCGAACGG CGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAA CTCTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCG TC AAATGATACGAGATACTGGTGGGAGGAAC ]
[+] EMBL BM646822 [ ccGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAAGAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCCATGACCAACCCAATCGAACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTTCGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATGTAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATACGTGACGGATGTGGGTCGCGAGCTGAACAAACTGATCTTCCGATAAGCTCGCCAACCTCTGTGCACCAACGGTGCCTAAGAAA AGGAACAGGATGAGGGGCCGCGGTGATATATTTGTACC TTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGACTGTTAGGACGATTCGCTCAAAATGATACGAGATACTGGTGGGAGGAACGCAAAATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA]
consensusID : consensus_6929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[GCAGAATCCGCACGANNGTATGAAGACTTCATCGTGTACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAATCAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCGACAGGCACCAGAACCGGCTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGNCAGCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGNTGTACGACGTGGATGTCGCTATGAGCAAGCCGAAGCGAAACGGCGTTTCAAGTGTAACAAAGCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGTGAAAACCGNCTCGAACGGTAGGACCCGGAT]
[+] EMBL BX467799 [GCAGAATCCGCACGANNGTATGAAGACTTCATCGTGTACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAATCAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCGACAGGCACCAGAACCGGCTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACATCGGTGCGATCAACGAGTATCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGTGTCCAGCGACGTGTCGCGCTTTTCCATCGNCAGCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGNTGTACGACGTGGATGTCGCTATGAGCAAGCCGAAGCGAAACGGCGTTTCAAGTGTAACAAAGCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGTGAAAACCGNCTCGAACGGTAGGACCCGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6929#0 -----------------------------------------------------AAGAATC 7
consensus_6929#1 ATCGCACGAGGTGNAACTACAATGCGGCAAGCTGACGTACATCGGTGCGATCAACGAGTA 60
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 GCCACGAGGTAACTCC-GGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGT 66
consensus_6929#1 TCTCTATCCCAGCTCCCGGCTGCGCGTCAACAACCAGTTTCTGAAGTACGCCTGGAAAGT 120
consensus_6929#2 ---------------------GCAGAATCCGCACGANNGTATGAAGACTTCATCGT--GT 37
** ** * * ***** * * * **
consensus_6929#0 GTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAA 126
consensus_6929#1 GTCCAGCGACGTGTCGCGCTTTTCCATCGCCAGCCGGTCGGTGTGCATTGACAAGCGGAA 180
consensus_6929#2 ACCCAGCAATGCGCTGAACGGTGCGACCGCTTCGCTGCTGTACAGCCACGGCATCAAAAT 97
***** * * * * * * * * *** * * * ** * ** *
consensus_6929#0 GAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTTGCTATGACCAACCCAACCGA 186
consensus_6929#1 GAAAATATTTTCCGACAACCTGCTGTACGACGTGGATGTCGCTATGACCAACC-AACCGA 239
consensus_6929#2 CAATCTGTTGCCGTACAACTTCCCGTTCGATTTGGCCG-----ACAGGCACCAGAACCGG 152
** * ** * ***** * * ** *** *** * * ** * *****
consensus_6929#0 ACGGCCGTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTT 246
consensus_6929#1 ACGGC-GTTTCAAGTGTACAAGCCGCAAGACTACAACCGTACGGCTGGCACGCCGGATTT 298
consensus_6929#2 -CTGCTAATCGAAATGGACTGCCTGATGCGCAACTACAATGCGGCCAAGCTGACGTACAT 211
* ** * ** ** ** * * * ** ** * **** * ** * *
consensus_6929#0 CGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATG 306
consensus_6929#1 CGTGAAAACGCTCGACGTAGACCGATCCCTGCTCTTTGTCCATCGGTACGGAGGGAAATG 358
consensus_6929#2 CGGTGCGATCAACGA-GTATCTCTATCCCAGCTC-----CCGGCTGCGCGTCAACAACCA 265
** * *** *** * ***** **** ** * * ** **
consensus_6929#0 TAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATA 366
consensus_6929#1 TAGCAGCAAAACGAACCTGCACGACTGGACTGTCAGTCTGCAGCCGGACTTTCTGCAATA 418
consensus_6929#2 -GTTTCTGAAGTACGCCTGGAAAGT--GTCCAGCGACGTGTCGC-GCTTTTCCATCGNCA 321
** **** * * * * ** ** * ** * * *
consensus_6929#0 CGTGACGGATGTGGGTCGC--GAGCTGAACAAGCTGATCTTCCGATAAGCTCGCCAACCT 424
consensus_6929#1 CGTGACGGATGTGGGTCGC--GAGCTGAACAAACTAATCTTCCGATAAGCTCGCCAAC-T 475
consensus_6929#2 GCCGGTCGGTGTGCATTGACAAAGCGGGAAGAAAATATTTTCCGACAACCTGN------- 374
* * **** * * *** * * * ** ****** ** **
consensus_6929#0 CTGTGCACCAACGGTGCCTAAGAAAA-GGAACAGGATGAGGGGCCGCGGTGATATATTTG 483
consensus_6929#1 CTGTGCACCAACGGTGCCTAAGAAANAGGAACAGGATGAGGGGCCGCGGTGATATATTTG 535
consensus_6929#2 -TGTACGACGTGGATGTC---GCTAT--GAGCAAGCCGAAGCGAAACGGCGTTTCAAGTG 428
*** * * * ** * * * ** ** * ** * * *** * * * **
consensus_6929#0 TACCTTT-CCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGAC-TGTTAGG 541
consensus_6929#1 TACCTTTTCCTCTAGAGGCCGCAGCAGAATAATGGAAGCGTACACAGCTGAC-TGTTAGG 594
consensus_6929#2 TAACAAA--GCCGGAAGACTACAAGCCGGTACCGGCCTAGGGCACCGCCGGGATTTCCGT 486
** * * ** * ** ** ** * *** ** * * * *
consensus_6929#0 ACGATTCGCTCAAAATGATACGAGATACAAGGTGGGAGGAACGCAAAATCACACACACAC 601
consensus_6929#1 ACGATTCGTC--AAATGATACGAGATACT-GGTGGGAGGAACGCAAAATCACACACACAC 651
consensus_6929#2 GAAAACCGNCTCGAACGGTAGGACCCGGAT------------------------------ 516
* ** ** * ** **
consensus_6929#0 ACACCGGGATATGGTGGTCTAGGAAGCATTTTCGGAATGGTTTCGATAAGTAAGCA-ATA 660
consensus_6929#1 ACACACACACACA-----CACACACACACACACACACACACACACACACACACACACACA 706
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 TTCCCATTTTCCCTGCAGCTGGGTAGGGTTTGTTGGAACGTTTCTTTACATAAGCCATAA 720
consensus_6929#1 CACCGGGGATACGGTGGTCTAGGAAGCATTTTTCGGA----------------------- 743
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 GCATTACTAAGCCTCGTGGTTTAGCAATTCGTTTTCTATCACACTAAGCTAAATATCTCC 780
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 TTTCGGCTCGATTATCTATTACTACTAAGGGGTCACATCTTCGTTCACCGTTCACAGGAT 840
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 ACAGGTTGGATGGTTTGAGGAATATCAAAAAACAAAAAAAAAAACAGAAAGTAGATGCAA 900
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 AAAAACCCCCATTACATGATAGATCTCGATAGGCAAACTATAGCTTGTAAGTAATTTTTA 960
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 GAGAGAGAGAGAGAGAAAAAAACAAGTTAGAGATAACGTATCGAACTCCGTGCTCAGAAA 1020
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 TGGTGCAGTTTTTAGCGACACTGAAGAACAATAATTATTCAATCAATCAAAGAAACAAAC 1080
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 AGAACTCTTCTCTTTCTTCTTAACTAAACCAAACGTATTTGATCTTACCGTACGGATATA 1140
consensus_6929#1 ------------------------------------------------------------
consensus_6929#2 ------------------------------------------------------------
consensus_6929#0 TTGAGCAGCATCCAAACGATATCAATTTATTCAATAAAAGTTCA 1184
consensus_6929#1 --------------------------------------------
consensus_6929#2 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||