These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1145 fasta sequence [TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC-CCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG] [+] EMBL BX614158 [TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGG ] [+] EMBL BM642214 [ ccgGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC CCACAGCAACAC ] [+] EMBL BM642867 [ ccgCTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACACCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG] consensusID : consensus_6953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1033 fasta sequence [AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT] [+] EMBL BX613568 [AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAG ] [+] EMBL BX614023 [ AACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGT ] [+] EMBL BM614878 [ ccgtGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAAGAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6953#0 TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATAC 60 consensus_6953#1 --AATTAATTCT----TCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGAT-TATGC 53 * ** * * **** * * ** * * * ** ** ** * consensus_6953#0 ATATACATACACCTACTTATATCATAGTGCGAAATA-TGAGCTGTTGAAAGCCACAACCC 119 consensus_6953#1 ATAAATG-AAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCA--AACA 110 *** * * * * **** * ******* * * * ******* * * consensus_6953#0 GTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATT 179 consensus_6953#1 AACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGT 170 * ** * ** * *** * * * ****** * * * *** * consensus_6953#0 ACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGA 239 consensus_6953#1 G---GGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAA 227 * * * * * * * *** * * *** ** * consensus_6953#0 TAAATGACTACAACACTAAACACACACACACACAC-ACACACTCACA-CACACACACACA 297 consensus_6953#1 CAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACT 287 *** ** * ** * * * * * ** ** consensus_6953#0 CACACACACACACACACCCAGACAAAGGATACACACCAA-CAAACAATTATGCAAATAAT 356 consensus_6953#1 CCC-CAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAA 346 * * ** * * * * * * * * *** ** ** * *** * consensus_6953#0 GGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAA 416 consensus_6953#1 AGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTG-AAAGAATT 405 * * * * *** * * *** ** * * ** consensus_6953#0 TCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTA 476 consensus_6953#1 TGTAACAAAACAAAGAAAATGAGAAAACGGTA-TCGATAGCAATTGCAAAGCAGTTA--- 461 * ****** * * * * * ** * ** * *** consensus_6953#0 CATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAA 536 consensus_6953#1 -AAAACTAATGCAAAAGCGACTTAAATATA-GTTCAGTCGTAGT--TTAGGCACTGTAGG 517 * ** ***** * * * * * * * * ** * * ** * *** consensus_6953#0 CCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACCCACAGCAAC 596 consensus_6953#1 GCGAGCAGCAGGAAACCAAT-GCACA-GAAAAAGCAAATCGCTCGTCGAATAACAGCAAA 575 * * * * ** * * * * ** * ** * * * ******* consensus_6953#0 ACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAAC 656 consensus_6953#1 ACAAACACACATACAA-------ACAAACAAAACTGGA--CAACCTAAGTAAGAAAGATC 626 *********** **** ** **** ** * ** * ** * **** * consensus_6953#0 AAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTA- 715 consensus_6953#1 CGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAG 686 ** * * * ** * * * ** * * * * *** ** ** * consensus_6953#0 CAAAACGTTACCACAATCAGTTTTCAATCGTCCGC--AGCCGAACTACTGTTGAATATTT 773 consensus_6953#1 TAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTT 746 *** * * *** * * * * ** * *** * ** **** consensus_6953#0 GATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAA 833 consensus_6953#1 AATG---TTTACCGGACGGGGTGCGTTTTG-----TTTGAAGTGAAACACACAAACATAA 798 ** **** * * ** ** *** * ***** * ** consensus_6953#0 ACAGCAAAAA--GGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGA 891 consensus_6953#1 ACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGA---AAGCAAAAGAAGC 855 ** * *** * * * * ** ** *** ** * **** * *** ***** * consensus_6953#0 AAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAAC 951 consensus_6953#1 TAAGTGGAAGAAAATTAA-----AATTATATATATACACACAAACTATACATATA----- 905 ** * ******* **** ** * *** * * *** * ** *** consensus_6953#0 GCATTGCTTGCGTGAGTGTGTGTGTGT-GAGTGTGAAAGAAAAAGTGAATGGTGTGGAAA 1010 consensus_6953#1 ------CCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAAC 959 * * * * * * * * ** * * ****** ** * ** consensus_6953#0 GGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAA 1070 consensus_6953#1 AATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGT 1019 ** ** ** *** **** ** * ** ** * * * * * * consensus_6953#0 AGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTG 1130 consensus_6953#1 TATGTTTTTAATTT---------------------------------------------- 1033 ** ** * consensus_6953#0 TAGGGCGAGCAGCAG 1145 consensus_6953#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||