|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1145 fasta sequence
[TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC-CCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG]
[+] EMBL BX614158 [TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATACATATACATACACCTACTTATATCATAGTGCGAAATATGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGG ]
[+] EMBL BM642214 [ ccgGAGCTGTTGAAAGCCACAACCCGTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATTACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGATAAATGACTACAACACTAAACACACACACACACACACACACTCACACACACACACACACACACACACACACACACCCAGACAAAGGATACACACCAACAAACAATTATGCAAATAATGGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAATCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTACATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAAC CCACAGCAACAC ]
[+] EMBL BM642867 [ ccgCTACTTTTAATCGCTTGGTGCCGTAAACCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACACCACAGCAACACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAACAAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTACAAAACGTTACCACAATCAGTTTTCAATCGTCCGCAGCCGAACTACTGTTGAATATTTGATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAAACAGCAAAAAGGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGAAAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAACGCATTGCTTGCGTGAGTGTGTGTGTGTGAGTGTGAAAGAAAAAGTGAATGGTGTGGAAAGGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAG]
consensusID : consensus_6953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1033 fasta sequence
[AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT]
[+] EMBL BX613568 [AATTAATTCTTCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGATTATGCATAAATGAAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAAAGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTGAAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAAAGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTGTAGGGCGAGCAGCAGGAAACCAATGCACAGAAAAAGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAG ]
[+] EMBL BX614023 [ AACAACAAAAGAATTAAAGCCAAACAAACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGTGGGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAACAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACTCCCCAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGT ]
[+] EMBL BM614878 [ ccgtGCAAATCGCTCGTCGAATAACAGCAAAACAAACACACATACAAACAAACAAAACTGGACAACCTAAGTAAGAAAGATCCGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAAGAAAATGAGTAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTTAATGTTTACCGGACGGGGTGCGTTTTGTTTGAAGTGAAACACACAAACATAAACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGAAAGCAAAAGAAGCTAAGTGGAAGAAAATTAAAATTATATATATACACACAAACTATACATATACCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAACAATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGTTATGTTTTTAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6953#0 TATACTAGCGCCGCGCTATGATTGTGCTATAATTTTTTATACCATAAAACCTATACATAC 60
consensus_6953#1 --AATTAATTCT----TCCAATTGAACGAGAAAGAGAGAAAGTGGATAAAAGAT-TATGC 53
* ** * * **** * * ** * * * ** ** ** *
consensus_6953#0 ATATACATACACCTACTTATATCATAGTGCGAAATA-TGAGCTGTTGAAAGCCACAACCC 119
consensus_6953#1 ATAAATG-AAAGCGGGACATATTTCAATGCGAAACAACAAAAGAATTAAAGCCA--AACA 110
*** * * * * **** * ******* * * * ******* * *
consensus_6953#0 GTTCAGGCTGTCGAGTGGTTCAGTGTGAAGGAAGACAGACAGTGGAAGATAATTGCAATT 179
consensus_6953#1 AACAAAGCATACACACCCAACACAGAGAATATAAAATGGATGTGGAATAAAGTGTCAAGT 170
* ** * ** * *** * * * ****** * * * *** *
consensus_6953#0 ACACAGAAGTAAACCGATCCTAGAAGAGGTTTAAAGACCCCAAAAAGGGATAGAAAAGGA 239
consensus_6953#1 G---GGGGATGTAGCAAATTAAATGAAACAACAAACGCTAAGCGCTGCGATGTGCAACAA 227
* * * * * * * *** * * *** ** *
consensus_6953#0 TAAATGACTACAACACTAAACACACACACACACAC-ACACACTCACA-CACACACACACA 297
consensus_6953#1 CAAAAACATATACTCTCGGCAGTGTGTGTGTTTTTTGTGTGCTTAGAGCGCTCCCAAACT 287
*** ** * ** * * * * * ** **
consensus_6953#0 CACACACACACACACACCCAGACAAAGGATACACACCAA-CAAACAATTATGCAAATAAT 356
consensus_6953#1 CCC-CAAATGTAAGCGCAAAATATGAAAACGCCCACTGGGTTAAAGTTTGAGAGAATCAA 346
* * ** * * * * * * * * *** ** ** * *** *
consensus_6953#0 GGGTTTTGTACCGATTATGATGATCCGTTTGAACCGTTCAAGTAATTTCTGCACATAAAA 416
consensus_6953#1 AGACGAAAAAGAACAAGAAAAAAGGAAACGGAAGGAAATGAATGATTATTG-AAAGAATT 405
* * * * *** * * *** ** * * **
consensus_6953#0 TCCAACAAACTGTTTTTATTCTAATTCTTACACTTCATCCCGTTTCTTACATTCTTATTA 476
consensus_6953#1 TGTAACAAAACAAAGAAAATGAGAAAACGGTA-TCGATAGCAATTGCAAAGCAGTTA--- 461
* ****** * * * * * ** * ** * ***
consensus_6953#0 CATGTCTGATGCACATGAGTTGTGCTTTTCTAACTACTTTTAATCGCTTGGTGCCGTAAA 536
consensus_6953#1 -AAAACTAATGCAAAAGCGACTTAAATATA-GTTCAGTCGTAGT--TTAGGCACTGTAGG 517
* ** ***** * * * * * * * * ** * * ** * ***
consensus_6953#0 CCCTCAAACTGCGTACTTTTTGTATAAGATTTAATAACACCACTGCTAACCCACAGCAAC 596
consensus_6953#1 GCGAGCAGCAGGAAACCAAT-GCACA-GAAAAAGCAAATCGCTCGTCGAATAACAGCAAA 575
* * * * ** * * * * ** * ** * * * *******
consensus_6953#0 ACAAACACACAAACAACCTGCATGCAGACAACACAAAAATGAAACCAAAACAAGAAGAAC 656
consensus_6953#1 ACAAACACACATACAA-------ACAAACAAAACTGGA--CAACCTAAGTAAGAAAGATC 626
*********** **** ** **** ** * ** * ** * **** *
consensus_6953#0 AAAAAAAACTACCCCAAAACCGACCATAAAACTATTTAACAGAACAACAACTACAACTA- 715
consensus_6953#1 CGAAGACGTTTCAATGCAATTTAACTTCGCACGGTGCATTGGCAGGGCAAATAAAATGAG 686
** * * * ** * * * ** * * * * *** ** ** *
consensus_6953#0 CAAAACGTTACCACAATCAGTTTTCAATCGTCCGC--AGCCGAACTACTGTTGAATATTT 773
consensus_6953#1 TAAAGCAAGAACACTAGGGAAAATAGAGAAACAAGTAAGACAAACAAACAAAAAACATTT 746
*** * * *** * * * * ** * *** * ** ****
consensus_6953#0 GATAAGTTTTAGCAGCTTAAACTTGTACTGCAACTTTTACTATATTTATCACAAGAAGAA 833
consensus_6953#1 AATG---TTTACCGGACGGGGTGCGTTTTG-----TTTGAAGTGAAACACACAAACATAA 798
** **** * * ** ** *** * ***** * **
consensus_6953#0 ACAGCAAAAA--GGAGAATAAATGAAGAAAAACAGTGGAACACTGTCAAGTGAAAGAGGA 891
consensus_6953#1 ACTGAAAACAATGCAAAGAAAGCGAGGAATAAGAATGGATGAGA---AAGCAAAAGAAGC 855
** * *** * * * * ** ** *** ** * **** * *** ***** *
consensus_6953#0 AAAATAGAAGAAAGTTAAGAAAAAAATGCATAAAACCGTGTAAAGAAAGCAAATAAGAAC 951
consensus_6953#1 TAAGTGGAAGAAAATTAA-----AATTATATATATACACACAAACTATACATATA----- 905
** * ******* **** ** * *** * * *** * ** ***
consensus_6953#0 GCATTGCTTGCGTGAGTGTGTGTGTGT-GAGTGTGAAAGAAAAAGTGAATGGTGTGGAAA 1010
consensus_6953#1 ------CCTAAACGTATATATATATAAAGAAAGCAGGAAAAAAAGCAAACAAAAAGTAAC 959
* * * * * * * * ** * * ****** ** * **
consensus_6953#0 GGGGGAAGAATTTGTAACAAAACAAAGAAAATGAGAAAACGGTATCGATAGCAATTGCAA 1070
consensus_6953#1 AATTGAGGACAAACCAAAAAACCAAAAAAGAGGAAAACCCAAAACTGTTGTACGTCACGT 1019
** ** ** *** **** ** * ** ** * * * * * *
consensus_6953#0 AGCAGTTAAAAACTAATGCAAAAGCGACTTAAATATAGTTCAGTCGTAGTTTAGGCACTG 1130
consensus_6953#1 TATGTTTTTAATTT---------------------------------------------- 1033
** ** *
consensus_6953#0 TAGGGCGAGCAGCAG 1145
consensus_6953#1 ---------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||