These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1075 fasta sequence [TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT] [+] EMBL BX612949 [TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTCACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAATATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTTTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTA ] [+] EMBL AGA284056 [ TTTTTTTTGGGGCGCTGTGAGACTTCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACA ] [+] EMBL BM602017 [ ccgCTAAAATCTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGGA TTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAAGCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCACAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCTCCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGACAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGGGGTGGTACAACACACCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGCGAGGGAGAGGGAGAGCGAACTCTGCTACTATT ] [+] EMBL AGA282918 [ GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACTGCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTCTGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACACTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTCGCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAAMMA ] [-] EMBL AGA285352 [ GAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGTATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAATGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCACTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT] consensusID : consensus_6955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT] [+] EMBL AL696300 [CAGATCGCCCGAGGTTCACGATCAACTTCAAGCCAACTGGTTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCACTTCCTAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTTTTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGATTATTTGTACGAGGCTCTCCTTTTTGTTATTCAATCAACTAAAGTGCGCTATGTTACGTTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATTTGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGCATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACATAGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6955#0 TGGACGCGCTAAGGTTTACGAACGATGTGCGATCGGTGCTGTCCCGCAATCTACACCTTC 60 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 ACCGTTTGTGGTAGCAGAATTTAACTAATTTTTTATGGTGCGCTGTGAGACTTCTAAAAT 120 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CTTACAAATACTTTTTTATTTTATTCTAATCTTATGATTACTTACCGGTCTAGTGAAGGG 180 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 ATTGTTTGTGTGTGTATGTGTGTGTGAGAGTTCTACTACTGAGAACGGTGTGAAACAAAA 240 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GCGTTAGTAGAACGGAATGCATGCAAAGACCATCGTCCTCTCCGGGTTGTGTTTTTAGCA 300 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CAGCCGAAGATGGTAAAAAGTATCATCGAAAGGGGGAGGGGATAGGGTATATGGTCTTCT 360 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CCAACTGTACTGTACCCGTATACCCGACAAACTTCCTACGTGTGTTACGTAGCTTATTGA 420 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CAGGCTAACACCACACACCCACCACCACCCCTCCTTGCTGCAAACGCAAAGCGGTACCGG 480 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GGTGGTACAACACGCCCTATTTAAGGTTAACGAATCGTGGTGGACATCGAAAGAGTTACT 540 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GCCCAGCTGCTGGTACTAGAATGGTGCGCATATATAGACAGGGAGAGGGAGAGCGAACTC 600 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 TGCTACTATTGCTAGTGATGAATTCTAGTAAGAAAACAAGCATTTGGTATGATTCCTACA 660 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 CTTCGAGGTAATCGCTTCAAACGCGTGACGATTGTAAAGCACACCTTGGAAGGTATCCTC 720 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GCGGAAGGGAAAGGGTAGGGGTGCTACAACAGTAGGGGAAAGGAGTAGGAGAGAGAGTGT 780 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 ATTTGCTAAATATGTTTTGTTATTATTTTATCGTCAACCGATCAACTTCAAGCCAA-TGG 839 consensus_6955#1 ------------------CAGATCGCCCGAGGTTCA--CGATCAACTTCAAGCCAACTGG 40 ** * *** ****************** *** consensus_6955#0 TTAGCACCATGATAAMMATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCAACAACCA 899 consensus_6955#1 TTAGCACCATGATAACCATTTGGATGAGCGCTTTTTCGTTTGAAGGGTTCGCGACAACCA 100 *************** *********************************** ******* consensus_6955#0 CTTCCTAAAACCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 959 consensus_6955#1 CTTCCTAAA-CCGCGGCGGAGAGATTCCTCCACACTCGTGTTTGGTTTACCCCTTTTTTT 159 ********* ************************************************** consensus_6955#0 TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 1019 consensus_6955#1 TTTTTGAAAATATTGTGTGTAAAATAGTAGTTTATAGTTCCAATCGTTTTTGGATATGAT 219 ************************************************************ consensus_6955#0 TATTTGTACGAGGCTCTCCTTTTTTTTGTTATTCAATCAACTAAAGTGCGCTATGT---- 1075 consensus_6955#1 TATTTGTACGAGGCTCTCCTTTT---TGTTATTCAATCAACTAAAGTGCGCTATGTTACG 276 *********************** ****************************** consensus_6955#0 ------------------------------------------------------------ consensus_6955#1 TTTATCGCTTTGTTGTGAATAAAAAAAAACGAATAAAAAACGAAAAGCTAATTCCCGATT 336 consensus_6955#0 ------------------------------------------------------------ consensus_6955#1 TGACCAGGACACCGGGAAGAATTCAATTCAAAGCTAAACCAATAAGAAACATCGCGATGC 396 consensus_6955#0 ------------------------------------------------------------ consensus_6955#1 ATTATTGGGCAAAGCTGTAGCTGCACAGGGCGCGCGCGCGCGCTTTCTATAATCAAACAT 456 consensus_6955#0 ------------------------------------------------- consensus_6955#1 AGTTAATTTGCTACGAAAATTAGCAATCAGNACGGTTGAGTTCTGCGTT 505 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||