These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1469 fasta sequence [ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATGAAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGATGAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCGCTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTATAATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGATCACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTCGGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGCTCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAAAGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTGTTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGGAAAACTGACA] [+] EMBL CNS08GU7 [ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATGAAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGATGAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCGCTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTATAATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGATCACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTCGGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGCTCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAAAGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTGTTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAcg ] [-] EMBL CNS08GU6 [ GTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGGAAAACTGACA] [-] EMBL BM582636 [ TTTATCACATTGATCGGTAAGAACGAGAGCCCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAGTCCCAGGTGCAGTCGGCCAATCTGTTGCTCGACAGATCCAGCTCGCTCAGCCGTAGCTGGCCAAGGGCGCGGGGCAAGATGCGTAAACAGTTGTTGGACAGGTTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCAAATCGTGAAAGCTTCACGTCGGTAATCTGCAATGACACGAGCAGGCGTGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGATATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGCAGTCGGAGTGGAGCCGATGGTGAAAAGGGGTTCGTGACGGACTGGGTCCCTTCCGTCGGTTGTCCGCAACCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGcgg ] [-] EMBL BX628546 [ CCAGCTCGCTCAGCCGTAGCTGGCCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTCTGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGACACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTGGTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACACGGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGCTGGGTCCCTTCCGCCGGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTAATCTGCACATCGTGCTCGGGTGTGACGAACGAAATCGTGGCCTTTCCTTCCTCCAGAAAGCGGGTAAATATCTTGCTTATGTTCTTTAGGACGCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATGAGCATGATCTTCGTTTCATCTCCCTTCCGCTCGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATT ] [-] EMBL BM586500 [ TCGAGAATGGAGACTTTTTTCTTCCCCACGGTAAGACACGGCAGTCGGAGTGGAGCCGATGGTGAAAAGGGGTTCGTGACGGACTGGGTCCCTTCCACCTGTTGTCCGCTTCCCGTGAGCACCAGCTTTAGCACCTTCAGGAACGCCGTCAGCTGAACTTTATCACTTTTcgg ] consensusID : consensus_6956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGCCGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGAACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACCGAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCCTCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATGAGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC] [-] EMBL BX468449 [GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGCCGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGAACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACCGAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCCTCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATGAGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCGTTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGATTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATTTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6956#0 ATGTAACCCAATAATTTATTAAAACACAGTAGCTACTAGTTTTTAGAATCCTCGATTATG 60 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 AAGTCTCCGCTCGTTCGCTTTCCGGATACACTTTTCGCTGCAAAAAACACTGTCCGCGAT 120 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 GAGAAGATGGTTGGCGTTGAGCACCAAGCAGGAACAGCGCCCATTGATCACTTTCGTGCG 180 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 CTGGTACACTTTCGCATCGAAACACGGTTGGCCACAGCCGCAAAGAGGCACACGGCGTAT 240 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 AATGTCCACCACGGTGAACGGCAACAGTCCTGGCATTGCGTATGGAAGCTTCCTATGGAT 300 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 CACGGTACGGCGGCGAGTTCGAACAGGGTCGACGGTTGCCGCTGCTGCATCGAAGGACTC 360 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 GGGTGTAGCTCAGCCATTCCTCCGTCGGGTGAAAGATTATTTTCCGACAGATCTAACCGC 420 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 TCCAGTCTTATTCGTTCCAAGGTTTCCGGTACACCATCGATCTGGTTTTTGGCCAACGAA 480 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 AGCACCCGAAGCCGACTCATAGTCCACAGCGCAAAGGGTAGCTTGCGGATGTGGTTGTTG 540 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 TTCGCTGTTAGTGCCACCAGTGCGCCAGCGTTTATCACATTGATCGGTAAGAACGAGAGC 600 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 CCGTTGTCGGAAATGTTGAGACTCTGCAGCGACGACTGAATGTTCGGTTCCAGTAGCCAG 660 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 TCAAAGGTGCAGTCGGCCAATCTGTTGCTCGACAGCTCCAGCTCGCTCAGCCGTAGCTGG 720 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 CCAAGTGCGCGGGGCAAGCTGCGTAAACAGTTGTTGGACAGATTTAAAAATCGAAGCTTC 780 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 TGTAGCAACAATATCTGTGAGTCGAATCGTGAAAGCTTCACGTCGGTAATCTGCAACGAC 840 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 ACGAGCAAGCGGGAAAAGCCTTTCGTTGGGTAGTCCTTCCTGTTCGTTATCACGCACTTG 900 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 GTCGCCAGGACACTCGGAGAATCGAGAATGGAGGCTTTTTTCTTCCCCACGGTAAGACAC 960 consensus_6956#1 ------------------------------------------------------------ consensus_6956#0 GGTAGTCGCAGTGGAGCGGACGGTGAGAAGGGGTTCGTGACGGGC-TGGGTCCCTTCCGC 1019 consensus_6956#1 ------------------GNGTGAGAACGGNGTTTCGTGACCGGCCTGGGTCCNTTCCGC 42 * * ** * * ******** *** ******* ****** consensus_6956#0 CGGTTGTCCGCTTCCC-GTGAGCACCAGCTTTAGCACCTTCA-GGAACGCCGTCAGCTGA 1077 consensus_6956#1 CGGTTGTCCGCTTCCCTGTGAGCACCAGCTTTAGCACCTTCAAGGAACGCCGTNAGCTGA 102 **************** ************************* ********** ****** consensus_6956#0 ACTTTA----TCACTTTT---AATCTGCACAT-------CGTGCTCGGGTGT-GACGAAC 1122 consensus_6956#1 ACTTGAAACGTCACCTGTGTAAATCCGTGCACAATTCGGTGCNTTCCGGGGTCGTTGACC 162 **** * **** * * **** * ** * ** ** ** * ** * consensus_6956#0 GAA-----------ATCGTGGCCTT-TCCTTCCTCC---AGAAAGCGGGT--AAATATCT 1165 consensus_6956#1 GAACCGGAATATTCGTTGCGCCCTTCTCCTTCCTTCCCAGAAAAGCCGGTTAAAATATCC 222 *** * * * **** ******** * ***** *** ******* consensus_6956#0 T--GCTTATGTTC-TTTAGGAC-GCTGTACTTGGTGCCGGCCTTGTTGGCGGTCGTAATG 1221 consensus_6956#1 TCGGCTNATGTTCCTTTAGGACCGCTGTACTTGGTGCCGGCCTTGTTGCGCGTCGTAATG 282 * *** ****** ******** ************************* ********* consensus_6956#0 AGCATGATC-TTCGTTTCATCTCCCTTCCGCTCGG-ATCCCTTCCCGATGGCAAGGATCG 1279 consensus_6956#1 AGCATGATCCTTCGTTTCATCTCCCTTCCGCTCGGGATCCCTTCCCGATGGCAAGGATCG 342 ********* ************************* ************************ consensus_6956#0 TTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGA 1339 consensus_6956#1 TTTTCTGGAACGCACGTTTACCCCAGGCCACGGACCGATTTATGGTGCAAGTCTCACAGA 402 ************************************************************ consensus_6956#0 TTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATT 1399 consensus_6956#1 TTAGCTTCATGTTGAACAAACGGCACCATACACATGCTTATTAGTAGTTTTACATTTATT 462 ************************************************************ consensus_6956#0 TTGCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGGATGGGACTGATTTCGCGCCAAGGG 1459 consensus_6956#1 T-GCTTTTCGTTGCGCTTTTTTCAACACTTCGGCGCACTCGTGCGGATTCTTGC------ 515 * ********************************* * * * *** ** consensus_6956#0 AAAACTGACA 1469 consensus_6956#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||