cluster # 6960

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Anopheles gambiae
cluster # 6960 cluster # 6960 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6960#0 length = 858 sequences # 5

consensus_6960#1 length = 279 sequences # 1

consensusID : consensus_6960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 858
fasta sequence

                              [TAGTTTGAGCNCTCTTAAACNTTTTACAATCAATGATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT-CACTCC-GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA-CGTA-CGAAGGAG-CAACTGGG-ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT-CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAACAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT]

[+] EMBL BX619550             [TAGTTTGAGCNCTCTTAAACNTTTTACAATCAATGATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGTCCACTCCGGTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTANCGTACCGAAGGAGCCAACTGGGAATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTATCCGTTTACAATTCATNCACAAGAAAACCAATTTAATTATCAATACATAANCGAAAGGATTGAAATATTAANTCAAAACCTTT                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM634430             [                                      ccgGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTGCGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTACATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CTTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCA                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM615166             [                                                 ccgAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTGCGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTACATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CTTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGTCATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACCAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATTCAACCACTAGGAGGACACTAT                                                                                              ]
[+] EMBL BX615261             [                                                                                                                                                                                AAACCGTTGAATCGAAGGCACGTGTAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAAT                                                               ]
[+] EMBL BM655386             [                                                                                                                                                                                                                                                                                                        ccgCC GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAACAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT]




>consensus_6960#0
TAGTTTGAGCNCTCTTAAACNTTTTACAATCAATGATGTACGTCAGTGTGGAAAAGATTT
CTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAA
ACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAAC
CGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTT
TCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGTCACTCC
GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACAT
GTTACGTACGAAGGAGCAACTGGGATACGATGTGTCGACTACACTGCGCGATAATGCTGG
AATATTGGGATTATCGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACAT
AGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGA
CATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGA
TCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAA
TAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCT
ATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGG
TAATAATGATAAAATAACGAACAATACCGCACTAACTTACAGCAATATTGATACGAAGAG
AGCTGCGAGCTTTCAATT

consensusID : consensus_6960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCATCTTAAACATTTTACAATCAATGATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAATGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACCCTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT]

[+] EMBL BX624743             [AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCATCTTAAACATTTTACAATCAATGATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAATGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACCCTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT]




>consensus_6960#1
AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCATCTTAAACATTTTACAATCAATG
ATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGG
GTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAAT
GGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACCC
TATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6960#0      --------------------------TAGTTTGAGCNCTCTTAAACNTTTTACAATCAAT 34
consensus_6960#1      AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCA-TCTTAAACATTTTACAATCAAT 59
                                                 *********  ******** *************

consensus_6960#0      GATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAG 94
consensus_6960#1      GATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAG 119
                      ************* **********************************************

consensus_6960#0      GGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTT-AA 153
consensus_6960#1      GGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAA 179
                      ****** ************************************************** **

consensus_6960#0      TGG-ATCGCCGATTGGAGATATCAAAA-CCGTTGAATC--GAAGGCAC-GTG-AAATACC 207
consensus_6960#1      TGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACC 239
                      *** *********************** **********   ******* *** *******

consensus_6960#0      -TATCGGGGAT--AATTATCT-ACGAG--TTTCCAATTTTCGAGAAAATGATATAAATAC 261
consensus_6960#1      CTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT-------------------- 279
                       ********    **** *** ****   ***********                    

consensus_6960#0      TGTAACTACGACTTTCTACCAAGCGGGGCCTGTCACTCCGTTCCTGCATGCGTGTCTAGA 321
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      GCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTACGTACGAAGGAGCAACT 381
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      GGGATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTATCGTTTAC 441
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      AATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATT 501
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      TAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAA 561
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      AACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCG 621
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      AAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACA 681
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      AGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGA 741
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      TCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAA 801
consensus_6960#1      ------------------------------------------------------------
                                                                                  

consensus_6960#0      CAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT 858
consensus_6960#1      ---------------------------------------------------------